DRSC/TRiP Functional Genomics Resources

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Protein Alignment bel and Ddx50

DIOPT Version :10

Sequence 1:NP_001262379.1 Gene:bel / 45826 FlyBaseID:FBgn0263231 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_001013216.2 Gene:Ddx50 / 361848 RGDID:1310934 Length:734 Species:Rattus norvegicus


Alignment Length:758 Identity:188/758 - (24%)
Similarity:289/758 - (38%) Gaps:206/758 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 EQTAEDGQAQQQQQPRNDRWQ---EPERPAGFDGSEGG----------QSAGGNRSYNNRGERG- 233
            |...|:.::|::::.:|||.:   ..|.....:..|.|          :.|......|...:.| 
  Rat    14 EAPLEESESQRKERQKNDRRKSRHHSESEERTETRENGVTDDLDAPKPKKAKTREKLNGDTKEGL 78

  Fly   234 ------GGGYNSRWKEGGGSNVD-YTKLGARDERLEVELFGVGNTGINFDKYEDIPVEATGQNVP 291
                  ...:.||.|:....:|| |.|...|....|       |:..:.||.::.......:.  
  Rat    79 RFSDEFSPSHKSRRKDLPNGDVDEYEKRSKRVSSSE-------NSHKSSDKADETLTREQKEG-- 134

  Fly   292 PNITSFDDVQLTEIIRNNVALARYDKPT---PVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353
                :|.:..::|   ..:.|.:....|   |:|......:..|:||:|.|:||:|||.:|.:|:
  Rat   135 ----AFSNFSISE---ETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 192

  Fly   354 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNT 418
            :.::         |..::..::.:.|..||||||||||.|:.::.|...  .::..|..|||.:.
  Rat   193 IERL---------QRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDIT--RKLNVACFYGGTSY 246

  Fly   419 SEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIV-EQLNM 482
            ..|:.::..|..::|.||||::|.:..|::.|..:|.:||||.|:|||:||..|:..|: |....
  Rat   247 QSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKS 311

  Fly   483 PPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTI-------LWVYEPDKR 540
            ......|||:||||.|:.:.::|..::.:. :..|..||..::....|:       .|...|...
  Rat   312 DSEDNPQTLLFSATCPQWVYKVAKKYMKSR-YEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375

  Fly   541 SYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLY-----QCNHPVTSIHGDRTQKEREE 600
            ..:|.:.|.        .:...:||.||||....:....:     ||      :|||..|.:||.
  Rat   376 GDVLQVYSG--------SEGRAIIFCETKKNVTEMAMNPHIKQNAQC------LHGDIAQSQREI 426

  Fly   601 ALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNE 665
            .|:.||.|...:||||.|||||||||.|..||....|.|||.|:||.|||||.|..|:...|:..
  Rat   427 TLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQP 491

  Fly   666 KNRN-------------------ICSDLL--------------------------ELLIETK--- 682
            :.|.                   ...||:                          :.|||.|   
  Rat   492 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAV 556

  Fly   683 --------------------------------QEIPSFMEDMSSDRGHGGAKRAG---------- 705
                                            .|.|..::|:|........|.:.          
  Rat   557 DALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSSNAVSQVTRMC 621

  Fly   706 --RGGGG----------------------------------RYGGGFGSRDYRQSSGGGGGGRSG 734
              :|..|                                  .|..|..|.:.||.| |..|||||
  Rat   622 LLKGNMGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSNPRQRS-GWSGGRSG 685

  Fly   735 PPPRSGGSGSGGGGGSYRSNGNSYGKFGGNSGGGGYYGGGAGG 777
            ...||||...|..|...|....|..:..|....|......:||
  Rat   686 RSGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRSGNRNRSRSGG 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
belNP_001262379.1 DEADc_DDX3 275..522 CDD:350809 73/250 (29%)
SF2_C_DEAD 527..663 CDD:350174 53/147 (36%)
Ddx50NP_001013216.2 SrmB 136..523 CDD:440279 129/415 (31%)
GUCT_RHII_Gualpha_beta 565..656 CDD:240593 7/90 (8%)

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