DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abl and ret

DIOPT Version :10

Sequence 1:NP_001261962.1 Gene:Abl / 45821 FlyBaseID:FBgn0000017 Length:1723 Species:Drosophila melanogaster
Sequence 2:NP_858048.2 Gene:ret / 30512 ZFINID:ZDB-GENE-980526-307 Length:1106 Species:Danio rerio


Alignment Length:411 Identity:133/411 - (32%)
Similarity:210/411 - (51%) Gaps:67/411 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 ISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLA 341
            |..:..:.::::||..||:|....||         |....||....:.|    ..:.|..|...|
Zfish   621 ICNDMCKTVIATGIILSFIVSVLLSS---------YFIHRYHKTTPKPP----IASAEMTFRRPA 672

  Fly   342 ELVHHHSVPHEGHGLITPLLYPAPKQNKPTVFPLS----------PEPDEWEICRTDIMMKHKLG 396
            :..              |:.|.|....:.::..:.          ||..:||..|.::::...||
Zfish   673 QSY--------------PISYSANNVRRASLDSMENQVAIDTFKIPEDPKWEFPRKNLVLGKTLG 723

  Fly   397 GGQYGEVYEAV-----WKRYGNTVAVKTLKEDT--MALKDFLEEAAIMKEMKHPNLVQLIGVCTR 454
            .|::|:|.:|.     .|....|||||.|||:.  ..|:|.|.|..::|::.||:::::.|.|::
Zfish   724 EGEFGKVVKATAFRLKGKAGYTTVAVKMLKENASHSELRDLLSEFTLLKQVNHPHVIKMYGACSQ 788

  Fly   455 EPPFYIITEFMSHGNLLDFLRSAGR-----------------ETLDAVA-----LLYMATQIASG 497
            :.|.|:|.|:..:|:|.:|||.:.:                 |..|..|     |:..|.||:.|
Zfish   789 DGPLYLIVEYAKYGSLRNFLRESRKVGPSYMGNDANRNSSYLENPDERALTMGDLISFAWQISRG 853

  Fly   498 MSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLAR-LMRDDTYTAHAGAKFPIKWTAPEGLAYN 561
            |.||.....:||||||||.||.:.:.:|::||||:| :..:|:|...:..:.|:||.|.|.|..:
Zfish   854 MQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDH 918

  Fly   562 KFSTKSDVWAFGVLLWEIATYGMSPYPAIDLTDVYHKLDKGYRMERPPGCPPEVYDLMRQCWQWD 626
            .::|:||||:||||||||.|.|.:|||.|....:::.|..|||||:|..|..|:|:||.:||:.:
Zfish   919 IYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMEKPENCTDEMYNLMLRCWKQE 983

  Fly   627 ATDRPTFKSIHHALEHMFQES 647
            :..||||..|...||.|..:|
Zfish   984 SDKRPTFSDISKELEKMMVKS 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AblNP_001261962.1 SH3_Abl 209..263 CDD:212784
SH2_ABL 268..363 CDD:198189 16/85 (19%)
PTKc_Abl 382..644 CDD:270645 111/291 (38%)
FABD 1584..1723 CDD:197885
retNP_858048.2 RET_CLD1 23..140 CDD:465485
CA 186..256 CDD:214520
RET_CLD3 251..364 CDD:465516
RET_CLD4 388..499 CDD:465517
PTKc_RET 715..1004 CDD:173631 109/288 (38%)
Blue background indicates that the domain is not in the aligned region.

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