DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdp1 and cebp-1

DIOPT Version :10

Sequence 1:NP_729301.1 Gene:Pdp1 / 45588 FlyBaseID:FBgn0016694 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_508276.2 Gene:cebp-1 / 180481 WormBaseID:WBGene00016997 Length:319 Species:Caenorhabditis elegans


Alignment Length:299 Identity:73/299 - (24%)
Similarity:110/299 - (36%) Gaps:68/299 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 HNHLNSLKARFQPASSGRKSPFLGFI-CKSNGKSTSNSKEIICPD-----------DKYKEEGDI 434
            |.||..|          ::|...||. ..:||.|||::......|           |:.:...|.
 Worm    18 HPHLVRL----------QQSEVRGFTDMPNNGASTSSAGSFARQDSLTIAASLQQRDRERHPVDF 72

  Fly   435 WNVEAQTAFLGPNLWDKTLPYDADLKVTQYADLD--EFLSENNIPDG--------LPGTHLGHSS 489
            ...|..   ||..|   .:.:|.|:. |...|.|  |....|.:.||        |.|.....:.
 Worm    73 METELD---LGDYL---QVLHDLDVP-TDNVDFDDAELQKCNILYDGEHPYEQPELNGYERHVAY 130

  Fly   490 GLGHR----SDSLGHAAGLSL-----GLGHITTKRE-RSPSPSDCISPD--------TLNPPSPA 536
            |.|:|    .|..|:.....:     ..|...|:|. :.|.|.|....:        |.|..|..
 Worm   131 GTGYRVPGDYDQDGYKMNCEVKAETPDFGATKTRRAVKRPVPYDDYQKEYSEESSDMTDNDGSVD 195

  Fly   537 ESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPDELKDDKYWARRRKNNIAAKRSRDA 601
            :|.|...|.      :|::...|..|||...:|.:.: ..:|..:..|..:|.:||.|.::||  
 Worm   196 DSYFEPKSK------KTKSAGLENFKPQTRARKYKLK-ADEEKAEPTYKLKRARNNDAVRKSR-- 251

  Fly   602 RRQKENQIAMRARYLEKENATLHQEVEQLKQENMDLRAR 640
            ::.||.|....|.: :|....: .|:|.|.|...|.|.|
 Worm   252 KKAKELQDKKEAEH-DKMKRRI-AELEGLLQSERDARRR 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdp1NP_729301.1 NAM-associated 514..609 CDD:464129 26/103 (25%)
bZIP_HLF 580..639 CDD:269843 17/58 (29%)
coiled coil 581..639 CDD:269843 17/57 (30%)
cebp-1NP_508276.2 DUF5401 <219..319 CDD:375164 21/75 (28%)
bZIP 233..280 CDD:473870 15/50 (30%)
coiled coil 236..280 CDD:269834 15/47 (32%)

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