DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and neurod6

DIOPT Version :10

Sequence 1:NP_524820.2 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001072273.1 Gene:neurod6 / 779726 XenbaseID:XB-GENE-969227 Length:337 Species:Xenopus tropicalis


Alignment Length:129 Identity:45/129 - (34%)
Similarity:70/129 - (54%) Gaps:19/129 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 KIEAFSALLIGKQPSAKKTLKERTQKESTSSSFLEASLSDEDLNKTGLAPISRPHQHQRNYKNMT 266
            |:|:.:..|:......|::.:|.|::|       |.....|:.::.||     |.:.....|.||
 Frog    33 KLESCAKQLVSHGKHIKRSPEEETEQE-------EEDEDREEEDENGL-----PRRRGPRKKKMT 85

  Fly   267 -------RERRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACSYILTLSRM 323
                   :.||:|||||||.|:|.::.|.:.||:.||.|:.||||||:..||:|.:||..||.:
 Frog    86 KVRIERIKVRRVEANARERGRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEI 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_524820.2 bHLH_TS_ATOH8 262..329 CDD:381427 33/69 (48%)
neurod6NP_001072273.1 bHLH_TS_NeuroD4_ATOH3 74..151 CDD:381564 34/76 (45%)
Neuro_bHLH 153..272 CDD:463621
Blue background indicates that the domain is not in the aligned region.

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