DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and twist1a

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_571059.1 Gene:twist1a / 30175 ZFINID:ZDB-GENE-000210-6 Length:171 Species:Danio rerio


Alignment Length:159 Identity:40/159 - (25%)
Similarity:73/159 - (45%) Gaps:42/159 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 AAHPEQLEPLALVTTKKQCVDQAGPKIEAFSALLIGKQPSAKKTLKE--------RTQKESTSSS 233
            ::.||  .|:..:...::.:|:..||      .:..|:.:::|..::        |::|.|.|||
Zfish    11 SSSPE--SPVDSLGNSEEELDRRQPK------RVSRKKRASRKNAEDSDSPTPGKRSKKCSNSSS 67

  Fly   234 FLEASLSDEDLNKTGLAPISRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAVPAY 298
               :..|.|||                      :.:|:.||.|||.|..:::.|:.:||:.:|..
Zfish    68 ---SPQSLEDL----------------------QTQRVMANVRERQRTQSLNEAFASLRKIIPTL 107

  Fly   299 ASTQKLSKLSVLRVACSYILTLSRMAGED 327
            .| .||||:..|::|..||..|.::...|
Zfish   108 PS-DKLSKIQTLKLAARYIDFLCQVLQSD 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 20/50 (40%)
twist1aNP_571059.1 HLH 78..128 CDD:278439 20/50 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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