DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin and lins1

DIOPT Version :10

Sequence 1:NP_524815.1 Gene:lin / 45325 FlyBaseID:FBgn0002552 Length:858 Species:Drosophila melanogaster
Sequence 2:XP_002939313.3 Gene:lins1 / 100486288 XenbaseID:XB-GENE-957262 Length:721 Species:Xenopus tropicalis


Alignment Length:450 Identity:97/450 - (21%)
Similarity:171/450 - (38%) Gaps:140/450 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 TTMPS----GCHVVTLTDSESFDTTHLKCITIQKLEHKWPTLVKNMSELMA---PTH-----QDA 486
            |.||.    .|....|...|:.....:..:.:|.|:   ||..:..|.|::   .||     .|.
 Frog   161 TVMPCLSTLICVFKGLLRDENLQQGDILSVLLQPLD---PTFERFCSSLLSDVGTTHCQTSALDP 222

  Fly   487 AEHCVLNFLQLWENIISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYGS 551
            ...|.|:.|                        ||..|||::..:.   ||:.|     .||:  
 Frog   223 ESSCCLSCL------------------------LDLMELLIALRIK---YKRSL-----PLCH-- 253

  Fly   552 TLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGKPMVYANGTITLAHAAQ 616
             ..|...:|:....::..:..:|:...|| .|.|    :::...|.:..|::::        .:|
 Frog   254 -TVLSVTIPQAFTLVSSPVAYYVKRQFIL-VLKR----SLLKKAGEDFYPVLHS--------MSQ 304

  Fly   617 SGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSI------AVTVKEIRSD------SSDSSIDSTDY 669
            .||        .::|.:.|:|   ||.:|.|:      .|.:::..|.      :|:||.|....
 Frog   305 PGD--------PVLEQEITML---VLALLNSVDQGWLLQVPIRDRISSFGGSYMASESSPDLVVL 358

  Fly   670 DAF-------QDMMLIERSIRDVLS-KLETFIKQTLEF-----------HPECHFSKILIHLFDD 715
            .|.       .::.|:|.::..::: ||::.:.|.|.|           || |.:..:   :|.:
 Frog   359 GAVCLSVLKALEIQLLEVTLSSIIAEKLQSVMDQLLAFLRHHLGWQKPWHP-CEWVSL---VFIE 419

  Fly   716 QDDHLIEAM------------------VCT-----LDVTSGISFRNNAFPELVAMLNPVYTFLEF 757
            |||.::|..                  ||.     :.:..|||.:....|..:        |:..
 Frog   420 QDDDMLEVANILLKMYLRCQNFWSQVPVCVNPGNEMGIWDGISHQFGCDPNCI--------FVLL 476

  Fly   758 LKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHSCHTFGMGSAMLDEAMGV 817
            |...:..:.:|||.|:|:|||||.|.:|.||.::.:|..|..:|....:.|.....|..|
 Frog   477 LNSVAFDTSVLLDFLISSETCFLEYFVRYLKLLKEDWPRFCLTCTLLELASCRKGSARDV 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
linNP_524815.1 LINES_N 441..801 CDD:464266 89/421 (21%)
LINES_C 814..850 CDD:464267 1/3 (33%)
lins1XP_002939313.3 LINES_N 168..520 CDD:464266 90/425 (21%)
LINES_C 676..707 CDD:464267
Blue background indicates that the domain is not in the aligned region.

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