DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and Itgb3

DIOPT Version :10

Sequence 1:NP_524793.2 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_058060.2 Gene:Itgb3 / 16416 MGIID:96612 Length:787 Species:Mus musculus


Alignment Length:853 Identity:328/853 - (38%)
Similarity:464/853 - (54%) Gaps:97/853 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ALLMIAILA-AIAGQTDAQKAAKLTAVSTCASKEKCHTCIQTEG-CAWCMQPDF-KGQSRCYQNT 73
            |||.:..|| .:.|:::         :.|......|..|:.... ||||..... :|..||....
Mouse    12 ALLALGALAGVVVGESN---------ICTTRGVNSCQQCLAVSPVCAWCSDETLSQGSPRCNLKE 67

  Fly    74 SSL---CPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQS 135
            :.|   |..|....|::..|||....|                                     |
Mouse    68 NLLKDNCAPESIEFPVSEAQILEARPL-------------------------------------S 95

  Fly   136 SSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD 200
            |.||.|::        :|.|:.||.:.|.||.::.....:...|.|.||||:|||||||.||:||
Mouse    96 SKGSGSSA--------QITQVSPQRIALRLRPDDSKIFSLQVRQVEDYPVDIYYLMDLSFSMKDD 152

  Fly   201 KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYV-STIPKKLEHPCEN----CKAPYGYQN 260
            .:.:.|||.||:..|:::|:|..:|||:||||.:.||: .:.|:.:::||.|    |...:||::
Mouse   153 LSSIQTLGTKLASQMRKLTSNLRIGFGAFVDKPVSPYMYISPPQAIKNPCYNMKNACLPMFGYKH 217

  Fly   261 HMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGFHYA 325
            .:.|.:....|:.|||..:||.|.|||||||||||||..|..:||||..|..||||:|||..|.|
Mouse   218 VLTLTDQVSRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 282

  Fly   326 GDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLV 390
            .||:|.|::.||||.||:.....|:.||..||||:..:.:|:....||:|||||.:.:|:|:...
Mouse   283 LDGRLAGIVLPNDGHCHIGTDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVSLYQNYS 347

  Fly   391 EHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMK-DNATGDVKITYFSSCLSNGPEVQTSKCD 454
            |.|.|::...|.:|||||::|:.:.|.||.|.||:: .:...::.:::.::||:|........|.
Mouse   348 ELIPGTTVGVLSDDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCV 412

  Fly   455 NLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCE---NPGSIGYQ 516
            .||.|..|||:.:.::..||::..   |:..|.|||..:.:.:|:|..|.|.|:   .|.|    
Mouse   413 GLKIGDTVSFSIEAKVRGCPQEKE---QSFTIKPVGFKDSLTVQVTFDCDCACQAFAQPSS---- 470

  Fly   517 VQANSCSGHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCSGRGHCVCGA 581
            .:.|  :|:||..||:|.||..:.|:.||||..|.......:.|.:.....   ||.||.|:||.
Mouse   471 PRCN--NGNGTFECGVCRCDQGWLGSMCECSEEDYRPSQQEECSPKEGQPI---CSQRGECLCGQ 530

  Fly   582 CECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDT 646
            |.||.  :....|:||:||||:|||.|.:.::|||  ||.|.||.|.|...|||..|.|....||
Mouse   531 CVCHS--SDFGKITGKYCECDDFSCVRYKGEMCSG--HGQCNCGDCVCDSDWTGYYCNCTTRTDT 591

  Fly   647 CMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQCQMYKTGELKN 711
            ||.. .|.:|||.|.||||.|.|.  ..|.: |..|||||||...|...|:||:|:.:..|.|..
Mouse   592 CMST-NGLLCSGRGNCECGSCVCV--QPGSY-GDTCEKCPTCPDACSFKKECVECKKFNRGTLHE 652

  Fly   712 GDDCARNCTQFVPVGVEKV-EIDET-KDEQMCKFFDEDDCKFMFKYSE--QGELHVYAQENKECP 772
            .:.|:|.|..    .:|:| |:.:| |:...|.:.:||||...|:|.|  .|...:|..|..|||
Mouse   653 ENTCSRYCRD----DIEQVKELTDTGKNAVNCTYKNEDDCVVRFQYYEDTSGRAVLYVVEEPECP 713

  Fly   773 AKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFEKERMNAKWDTGENPIYKQATST 837
            ....:|.:::.|:.||:|:|||.||:||||.|||||:|||:||:||..|||||..||:||:||||
Mouse   714 KGPDILVVLLSVMGAILLIGLATLLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATST 778

  Fly   838 FKNPMYAG 845
            |.|..|.|
Mouse   779 FTNITYRG 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_524793.2 INB 45..505 CDD:197563 169/470 (36%)
Integrin_B_tail 692..775 CDD:462325 29/86 (34%)
Integrin_b_cyt 803..843 CDD:462580 27/39 (69%)
Itgb3NP_058060.2 INB 37..460 CDD:197563 169/470 (36%)
CX3CL1-binding. /evidence=ECO:0000250|UniProtKB:P05106 202..209 2/6 (33%)
Involved in CX3CL1-, NRG1-, FGF1-and IGF1-binding. /evidence=ECO:0000250|UniProtKB:P05106 202..209 2/6 (33%)
CX3CL1-binding. /evidence=ECO:0000250|UniProtKB:P05106 292..312 9/19 (47%)
I-EGF_1 462..491 CDD:465729 12/34 (35%)
Integrin_B_tail 633..716 CDD:462325 29/86 (34%)
Integrin_b_cyt 744..784 CDD:462580 27/39 (69%)
LIR. /evidence=ECO:0000250|UniProtKB:P05106 776..782 4/5 (80%)

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