DRSC/TRiP Functional Genomics Resources

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Protein Alignment sub and cana

DIOPT Version :10

Sequence 1:NP_611260.1 Gene:sub / 44870 FlyBaseID:FBgn0003545 Length:628 Species:Drosophila melanogaster
Sequence 2:NP_001027247.1 Gene:cana / 3771934 FlyBaseID:FBgn0040233 Length:1931 Species:Drosophila melanogaster


Alignment Length:566 Identity:126/566 - (22%)
Similarity:221/566 - (39%) Gaps:178/566 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 SAADSSNVETGPQVFLRLRPVKDASKAYIVSEEANVLITSCKVDSTSNNVNRMEKH---FGFTSI 138
            |..::|::    ||.:::||.:..             :||........::...:.|   :.|..:
  Fly     2 STKNASSI----QVCIKVRPCEPG-------------LTSLWQVKEGRSIQLADSHAEPYVFDYV 49

  Fly   139 FDSTVGQRDIYDTCVGPKIMEEECV-----TIMTYGTSGSGKTYTLLGDDVRAGIIPRALENIFT 198
            ||.....::::|...  |.:...|:     ||..||.:.||||||::||:...|::..|.:.||.
  Fly    50 FDEGASNQEVFDRMA--KHIVHACMQGSNGTIFAYGQTSSGKTYTMMGDEQNPGVMVLAAKEIFQ 112

  Fly   199 IYQDTVFRSPKLKLINGSIVFLQDDASLKELQIRKKLLDLCPDISAHHQRLKQVIDGDHMFETKA 263
                                                                         :..:
  Fly   113 -------------------------------------------------------------QISS 116

  Fly   264 STDVSVLVWVSFVEIYNELVYDLLAIPPKQDKLGEVPRKN--LKIVGNKGHVFIKGLTSV----- 321
            .|:...|:.|.::|||||.:||||            .:||  |||     |....|:.:|     
  Fly   117 ETERDFLLRVGYIEIYNEKIYDLL------------NKKNQDLKI-----HESGNGIVNVNCKES 164

  Fly   322 FVTSSEEALRLLRLGQQRSTYASTSVNANSSRSHCVFTVDILKYNRS-----GITTQSSYKFCDL 381
            .|||.::.||.|.:|.:......|::|..|||||.:|.: |::..:|     ....||.....||
  Fly   165 IVTSEDDLLRQLYMGNKERVVGETNMNERSSRSHAIFRI-IIESRKSDHSDNDTVKQSVLSLVDL 228

  Fly   382 AGSERVNNTGTSGLRLKEAKNINTSLMVLGRCLDAAS-TVQKKKNADIIPYRDSKLTMLLQAALL 445
            ||||:|:....:           :|||:....:.:.| :|..|.|:    :|||||..::..:|.
  Fly   229 AGSEQVDPADHA-----------SSLMIFRNLVKSLSESVDSKPNS----FRDSKLPRIMLPSLG 278

  Fly   446 GKEKLAMIVTVTPLDKYYEENLNVLNFASIAKNIIFKEPVIKQHRVSYCGFMEFSKMSTCEGGDY 510
            |....::|.|:||  .:.||:.:.::|.:.||.|..|..|.|..       .|.:.|...:.|  
  Fly   279 GNVLTSIICTITP--SFVEESSSTISFGTCAKKIRCKPQVCKID-------SETTMMRQLDRG-- 332

  Fly   511 TKELEDENVRLQLEIEQLKYDHVLQMQLLEEKLRRELTATYQEIIQNNKKQYEDECEKKLLIAQR 575
            ...|:|     :|..:::|.:..|.:|.||.:::|::.                    |::.:..
  Fly   333 ISMLKD-----KLAKKKIKNESQLVLQELEGRIKRDML--------------------KIVSSAS 372

  Fly   576 ESEFMLSSQRRRYEEQIEDLKDEIEELKNPASDTDISDDPNESKSP 621
            ..::.|..:||.:.......:.:...|..|        :|.||:.|
  Fly   373 LDDYRLQKRRRTWTLTASGSEGDAPVLALP--------EPEESRLP 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
subNP_611260.1 KISc 89..477 CDD:276812 96/408 (24%)
GBP_C <512..603 CDD:293879 13/90 (14%)
coiled coil 576..586 CDD:293879 1/9 (11%)
coiled coil 592..603 CDD:293879 0/10 (0%)
canaNP_001027247.1 Motor_domain 8..310 CDD:473979 98/416 (24%)
CCDC158 <505..>729 CDD:464943
SMC_prok_B 622..1285 CDD:274008
SMC_prok_B 1110..1875 CDD:274008
Blue background indicates that the domain is not in the aligned region.

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