DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and SDG35

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_173998.2 Gene:SDG35 / 839217 AraportID:AT1G26760 Length:545 Species:Arabidopsis thaliana


Alignment Length:235 Identity:55/235 - (23%)
Similarity:89/235 - (37%) Gaps:64/235 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 YLGV------SITDHSCQPNAVATFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLK 270
            |.||      |..:|||.|||.....|:.:.|||..|::  ...:|..:|.|:| :|.::|.::.
plant   328 YYGVGLWTLASFINHSCIPNARRLHVGDYVIVHASRDIK--TGEEISFAYFDVL-SPLEKRKEMA 389

  Fly   271 EHYYFLCVCSKCTDAKESKEMLAALCPNRNCGAGI--SVDRNNCPRCDAGISPKLRNAFNEAMTL 333
            |.:.|.|.||:|   |....:.|.....|....|:  .||..|                  |:.:
plant   390 ESWGFCCGCSRC---KFESVLYATNQEVREFEMGLERGVDAGN------------------AVYM 433

  Fly   334 TRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKW------------- 385
            ....::..|          ...|..|:   |...|....|..:.:...:.:|             
plant   434 VEEGMKRWK----------VKGKDKGL---LRASYWGVYDEIYNSERLMKRWGRKIPTMEVVVDS 485

  Fly   386 -SDALDYGQRLL----PGFRKYHGPWNPLLGLLH-MKLGK 419
             ||.:...:||:    .|..|.||.::.::.:.. |||||
plant   486 VSDVVGSDERLMKMAVEGMMKKHGGFSNIVEMEKIMKLGK 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 27/77 (35%)
zf-MYND 60..97 CDD:460312
TPR_12 <383..441 CDD:315987 14/56 (25%)
SDG35NP_173998.2 TPR 64..>144 CDD:440225
TPR repeat 73..103 CDD:276809
TPR repeat 108..135 CDD:276809
SET 190..402 CDD:442183 27/79 (34%)
SET_SMYD <325..401 CDD:380997 26/75 (35%)
Blue background indicates that the domain is not in the aligned region.

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