DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and smyd4

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:595 Identity:126/595 - (21%)
Similarity:206/595 - (34%) Gaps:197/595 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TVGSSRSATTSATASACSSKSKNL----KNPAPQIKRGQRILTEKPFAFVL-------------K 52
            ||.|:...:...:....|.|.:::    ..||     |:.:|.::.:..||             .
Zfish   177 TVNSTGHLSDGVSVYFSSDKGRHMLVMENKPA-----GEVVLEDEAYCSVLIPANIFNTGTNKAV 236

  Fly    53 SQYRLE--RCDNCL-EATKVLKCSNCRYVSYCHRSCQMQAWGQ-HKHECPFLKKVHPRVVPD--A 111
            ..:..|  .|.:|| ::...:.|..|.|..||..|||..||.| |:.|||        |..|  |
Zfish   237 ETFGTEDRHCHHCLSQSLSFVPCPKCSYARYCGESCQKDAWDQWHQWECP--------VGADLLA 293

  Fly   112 ARMLCRLILRLEHGGDLIRGYYTE--HGSRKFRDLMSHYAEIKND-PMR----------LEHLDS 163
            ..:|..|.||:     :::...||  .|.:..:|   |....||| |::          |:|.|.
Zfish   294 IGVLGHLALRV-----VLKAGQTEVQMGIKNTKD---HVTTYKNDSPVQLSLGGDCGKSLDHTDC 350

  Fly   164 LH--------AVLTDMMAESPST-------------------VPNK-------------TELMSI 188
            .|        ::|..:...||::                   .|||             ...||:
Zfish   351 FHGSSYMGIYSLLPHVAQHSPASRFLMAITMAVIYGKLQGGPPPNKWMSFKDEGVKASWQPEMSM 415

  Fly   189 YG--------------RLIT-------NGFNILDAEMNSIATAIYLGVSITDHSCQPNAVATF-- 230
            .|              :.||       :|..:..:....|||||:..:|:.:|||.||...:|  
Zfish   416 LGATALRHMMQLRCNAQAITAVRVKEESGMAVQSSSEIRIATAIFPVLSLLNHSCSPNTSISFTT 480

  Fly   231 -------------EGNELH-----------VHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLK- 270
                         ||:..|           |.|.:|:..  ..:|...|     .|.:.|:::| 
Zfish   481 GFQPDPHNQLGCSEGHFDHPKGSRSGVTVTVRASKDLTA--GQEILHCY-----GPHRSRMEVKE 538

  Fly   271 ------EHYYFLCVCSKC-TDAKE----SKEMLAA------------------LCPNRNCGAGIS 306
                  |.|:|.|||..| .|..|    :||..|.                  .|...:||..||
Zfish   539 RQRLLLEQYFFQCVCQACQRDLSEGSPNAKEHTAPGMKCVKCGKPLQSHTDGYTCSWSSCGHQIS 603

  Fly   307 VDRNNCPRCDAGISPKLRN---AFNEAMTLTRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWY 368
                     .|.:..:|:.   ..:||:    |.:|..:....|.:.:....:...:....:.:.
Zfish   604 ---------SADVQNRLQGFQLLLDEAV----HLMEQDRLNEALHILQSAFSQANSILTETHPFQ 655

  Fly   369 VKTLDAAFEAAIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHH 433
            .:..||........|:||.|..:.:|.|...:...|..:..||....||.::.........:|..
Zfish   656 GELADALARLYASTGEWSLAASHLKRSLVAIQAQFGEDSIELGRQLFKLAQLHFNGRDGVASLSV 720

  Fly   434 LEEAQRILTV 443
            :..|:|:|::
Zfish   721 IPRARRLLSL 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 85/376 (23%)
zf-MYND 60..97 CDD:460312 15/38 (39%)
TPR_12 <383..441 CDD:315987 14/57 (25%)
smyd4NP_001070062.1 NlpI <65..>134 CDD:443815
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:460312 15/38 (39%)
SET_SMYD4 <352..556 CDD:380934 42/210 (20%)
TPR_12 621..683 CDD:315987 11/65 (17%)
Blue background indicates that the domain is not in the aligned region.

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