DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and AT1G26761

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001117357.1 Gene:AT1G26761 / 6241260 AraportID:AT1G26761 Length:444 Species:Arabidopsis thaliana


Alignment Length:187 Identity:34/187 - (18%)
Similarity:63/187 - (33%) Gaps:60/187 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 EHGGDLIRGYYTEHGSRKFRDLMSHYAEIKNDPM--------------------RLEHLDSLHAV 167
            |.|..:::.:.:::..|.:   |.::...|.:|:                    ::|..:.:..|
plant    83 EIGSPVVKRFLSDNEERWY---MWYHGSSKQNPVSDSIGLAVSNNGIHWERGNGKVESSEDVGLV 144

  Fly   168 LT---DMMA-ESPSTVPNKTELM---------SIYGRLITNGFNILDAEMNSIATAIYLGVSITD 219
            ::   |... ::.|..|.:..:|         |:|....| |:.....|..|......||.....
plant   145 MSCGEDWWGFDTASVRPGEVVIMSSSKVRANSSVYWMYYT-GYTKETVEFQSQDFTSVLGNPERF 208

  Fly   220 HSCQPNAV---------------------ATFEGNELHVHAIEDMEC-LDWSKIFIS 254
            |.|..||.                     |..|| |.|..|:.|:.. .||..::|:
plant   209 HLCDENAEKSRVYYRSLPGLAISQDGRHWARIEG-EHHSGALFDVGSEKDWDFLYIA 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 34/187 (18%)
zf-MYND 60..97 CDD:460312
TPR_12 <383..441 CDD:315987
AT1G26761NP_001117357.1 GH43_62_32_68_117_130 <99..>130 CDD:449341 4/33 (12%)
GH43_62_32_68_117_130 202..430 CDD:449341 16/64 (25%)
Blue background indicates that the domain is not in the aligned region.

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