DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and smyd2b

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001025394.3 Gene:smyd2b / 568616 ZFINID:ZDB-GENE-041001-201 Length:434 Species:Danio rerio


Alignment Length:431 Identity:103/431 - (23%)
Similarity:203/431 - (47%) Gaps:49/431 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GQRILTEKPFAFVLKSQYRLERCDNCLEATKVL-KCSNCRYVSYCHRSCQMQAWGQHKHE----C 97
            |:.:.:...:::||....|...|:.|....|.| ||..|:...||:.:||.:.|..||.|    |
Zfish    31 GELLFSCPAYSYVLSVGERGLICEQCFTRKKGLAKCGKCKKAFYCNANCQKKNWPMHKLECQAMC 95

  Fly    98 PFLKKVHPRVVPDAARMLCRLILRLEHGGD-------LIRGYYTEHGSRKFRDLMSHYAEIKND- 154
            .|.:...|   .:..|::.|:|.||:...:       |:.|           ::.:|..::.|: 
Zfish    96 AFGENWRP---SETVRLVARIIARLKAQKERSPSEILLLLG-----------EMEAHLEDMDNEK 146

  Fly   155 -PMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLITNGFNILDAEMNSIATAIYLGVSIT 218
             .|...|:..||...:..:     ..|:...|::::.::..|||.:.|.|::::..||:..:::.
Zfish   147 REMTEAHIAGLHQFYSKHL-----DFPDHQALLTLFSQVHCNGFTVEDEELSNLGLAIFPDIALL 206

  Fly   219 DHSCQPNAVATFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCT 283
            :|||.||.:.|:.|....|.|::|:.  ...:|:.||||||.....|...|::.|||.|.|.:||
Zfish   207 NHSCSPNVIVTYRGINAEVRAVKDIS--PGQEIYTSYIDLLYPTADRLERLRDMYYFSCDCKECT 269

  Fly   284 DAKESKEMLAALCPNRNCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLD 348
              .:|.:::.           :||.:.:....:..|...:|.|.| :|...|...::......|:
Zfish   270 --TKSMDVVK-----------MSVRKRSDEIGEKEIKDMVRYARN-SMENFRRAKQDKSPTELLE 320

  Fly   349 VCKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLL 413
            :|::.:||.:.||...|::.:..:..|....:....:..|:.||::::..|...:..::..:..:
Zfish   321 MCELSIDKMSTVFDDSNIYILHMMYQAMGICLFTEDYEGAVRYGEKVIKPFTVLYPAYSMNVASM 385

  Fly   414 HMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHRLLTE 454
            ::|||::.:........:...::|..|:.|.||:||..:||
Zfish   386 YLKLGRLYIALDRKLAGIDAFQKALTIMEVVHGKDHTYVTE 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 69/259 (27%)
zf-MYND 60..97 CDD:460312 15/41 (37%)
TPR_12 <383..441 CDD:315987 8/57 (14%)
smyd2bNP_001025394.3 None

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