DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and LOC3289638

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_566179.1 Gene:LOC3289638 / 3289638 VectorBaseID:AGAMI1_014221 Length:526 Species:Anopheles gambiae


Alignment Length:438 Identity:80/438 - (18%)
Similarity:150/438 - (34%) Gaps:132/438 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SRSATTSATASACSSKSKN------LKNPA----------------PQ----------IKRGQRI 41
            :||...|||..|....|::      |..||                ||          :|.|..:
Mosquito   109 ARSMLLSATDDATPGSSRHGAAPLKLSFPAYENAPRVANCLEMRRSPQYGRYLQTNKALKVGDVV 173

  Fly    42 LTEKPFAFVLKSQYRLERCDNCLEAT--KVLKCSNCRYVSYCHRSCQMQAWGQ-HKHECPFLKKV 103
            :.::|:..||:.::...|||:|....  .::.|..|....||.::|..:|..: |:.||..:..:
Mosquito   174 MIDEPYVSVLEPEFCYARCDHCQRPAPFTLIPCERCTKAMYCSKNCLRRARTEYHEFECALVHHL 238

  Fly   104 HPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAEIKNDPMRLEHLD----SL 164
            ..........:..|.:.|      .|..|  .:..|..:...::.:..:.:|:.|..:|    :.
Mosquito   239 TETTRDPVVLLAWRAVTR------AISTY--RYNLRHLKQRRNYLSRTEVNPLMLNWVDGQKIAF 295

  Fly   165 HAV-LTDMMAESPSTVPNKTELMSI----YGRLITNGFNILDAEMNSI----------------- 207
            .|| :...:|.:|:. |.:..:..|    :..|::......:.:..|:                 
Mosquito   296 SAVYILASLARAPND-PVEARVAQISREMHCHLVSENGQTANDDSGSVPYPWVGEMCYRFLKVMQ 359

  Fly   208 -----------------------ATAIYLGVSITDHSCQPNAVATFEGNELHVHAIEDMECLDWS 249
                                   |...:..:|:.:|||.|| |..|:..:....|:.........
Mosquito   360 CNARPAQLTRRDEPEGQYRAVPFALRCHPLISLLNHSCAPN-VKCFDLRDGRCSAVVIQPIAAGG 423

  Fly   250 KIFISY-IDLLNT-PEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCPNRNCGAGISVDRNNC 312
            ::|.:| .|.|.| .::||..|:..:.|.|.|..|                          .||.
Mosquito   424 QLFANYGYDYLQTGRDERREGLQRVFGFTCNCDAC--------------------------ENNY 462

  Fly   313 PRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVCKVCLDKQTGV 360
            |..:     ..|:...:.:..||    :|| .|:.::.|:..:...||
Mosquito   463 PTAE-----PFRSGLMDIILHTR----DMK-TAFRNMAKLLAEVNEGV 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 57/313 (18%)
zf-MYND 60..97 CDD:460312 10/39 (26%)
TPR_12 <383..441 CDD:315987
LOC3289638XP_566179.1 SET 143..458 CDD:394802 57/324 (18%)
Blue background indicates that the domain is not in the aligned region.

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