DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smyd3 and Smyd4

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001099280.1 Gene:Smyd4 / 287525 RGDID:1307369 Length:801 Species:Rattus norvegicus


Alignment Length:581 Identity:119/581 - (20%)
Similarity:193/581 - (33%) Gaps:188/581 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SATASACSSKSKNLKNPAPQ-IKRGQRILTEKPFAFVLKS------QYRLER------------C 60
            |.:.|.|:...|.....|.: |..|:.::.|..|..||..      ::.||.            |
  Rat   232 SLSVSLCTDPLKGRHLVATKDILPGELLVKEDAFVSVLNPGEMPPLRHCLENKWDTRVTSADLYC 296

  Fly    61 DNCLEAT-KVLKCSNCRYVSYCHRSCQMQAWGQ-HKHEC-------------------PFLKKVH 104
            ..||..| ..:.|..|.|..||.:.|..|||.. |..||                   ..|.:..
  Rat   297 HRCLRHTLATVPCGGCSYAKYCSQECVQQAWDHYHSTECSLGGLLLTLGVFCHVALRMTLLARFE 361

  Fly   105 --PRVVPDAARMLC----RLILRLEHGGDLIRGY-YTEHG------------------SRKFRD- 143
              .||:    ||:|    |....|....||::.: ||..|                  :.|:.: 
  Rat   362 DVDRVI----RMICDKTGRKDTCLPESKDLVKTFGYTNQGESEENSETCEPSIPGCNVNGKYENN 422

  Fly   144 ------LMSHYAEIKNDPMRLEH----------------LDSLHAVLTDMMAESP---STVPNKT 183
                  |:.|..  |:.|   ||                ..||.|..|.:  :||   :..|...
  Rat   423 YDAVLSLLPHTE--KHSP---EHKFICAVSVSALCRQLKATSLQAQTTGL--KSPRLKAVTPGLC 480

  Fly   184 ELMSIYG---------------------------RLITNGFNILDAEMNSIATAIYLGVSITDHS 221
            ..::::|                           .:|||...:      .:||.::..||:.:||
  Rat   481 TDLTVWGVAMLQHMLQLQCNAQAITSICYAGSKESIITNSRQV------RLATGVFPVVSLLNHS 539

  Fly   222 CQPNAVATFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKE-------HYYFLCVC 279
            |.||...:|......:.|.:  :.....:|...|     .|.:.|:.:.|       .|:|.|.|
  Rat   540 CSPNTSVSFTSTVATIRAAQ--QIAKGQEILHCY-----GPHESRMGVAERQQRLSSQYFFDCSC 597

  Fly   280 SKCTDAKESKEMLAAL-----------------------CPNRNCGAGISVDRNNCPRCDAGISP 321
            ..|    .::.:.||:                       |.|.:|...:|.||......|     
  Rat   598 PAC----HAETLRAAVAPRWEAFCCNTCRVPMQGNDVLSCSNESCTNSVSRDRLVSRLQD----- 653

  Fly   322 KLRNAFNEAMTLTRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWS 386
             |:...:.|..|.|.:... :.:..|..|:...:......|.:   ..:..|...:|...:|.|.
  Rat   654 -LQQQVHTAQKLLRSDRPE-QAIQQLLECQRAAENFLSAEHTV---LGEIEDGLAQAYATLGDWR 713

  Fly   387 DALDYGQRLLPGFRKYHGPWNPLLGLLHMKLGKIQLYEGHS-KEALHHLEEAQRILTVTHG 446
            .:..:.|:.|......|||.:..:|....||.:: |:.|.: .|||..:.:|::||.|..|
  Rat   714 QSAAHVQKSLQVVEARHGPSSVEIGHELFKLAQV-LFNGLAVPEALDAIWKAEKILLVHCG 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 76/374 (20%)
zf-MYND 60..97 CDD:460312 14/38 (37%)
TPR_12 <383..441 CDD:315987 16/58 (28%)
Smyd4NP_001099280.1 3a0801s09 7..>211 CDD:273380
TPR repeat 68..96 CDD:276809
TPR repeat 101..136 CDD:276809
SET 239..>269 CDD:394802 6/29 (21%)
zf-MYND 296..335 CDD:460312 14/38 (37%)
SET_SMYD4 418..600 CDD:380934 38/201 (19%)
TPR_12 661..728 CDD:315987 12/70 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.