DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and set-3

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_499143.1 Gene:set-3 / 182356 WormBaseID:WBGene00007403 Length:465 Species:Caenorhabditis elegans


Alignment Length:247 Identity:59/247 - (23%)
Similarity:90/247 - (36%) Gaps:67/247 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 IATAIYLGVSITDHSCQPNAVATFEGNEL-----HVHAIEDMECLDWSKIFISYIDLLNTPEQRR 266
            :||.::...||.:|||.||....|..|..     .|.|.|  |.||  ...::|..  :|.|||.
 Worm   219 MATGLFPISSIFNHSCTPNISGFFVRNTFIFVSQGVRARE--ELLD--SYGVTYHQ--HTFEQRT 277

  Fly   267 LDLKEHYYFLCVCSKCTDAK------ESKEMLAALCPNRNCGAGISVDRNNCPRCDAGISPKLRN 325
            ..|.....|:|.|..|...|      :.|:....:..|.:|...|:....|.||.    |.:|.|
 Worm   278 NFLASVSGFICHCESCFKMKSLKVLEKPKKYPETIATNASCFTDITSYTENIPRG----SKELEN 338

  Fly   326 ---AF-----NEAMT-----LTRHNLENMKDVA----------YLDVCKVCLDKQTGV------- 360
               ||     :|..|     ..:..:||.|...          |:::..:..:|:.|.       
 Worm   339 LIIAFARRPDSETYTELIFQFWKKFVENAKFRGITYDPYLVRPYVEMTILAWNKEVGCENEEKMS 403

  Fly   361 ---------------FHPLNVWYVKTLD-AAFEAAIEVGKWSDALDYGQRLL 396
                           .|||:...||.:: .|.:.|.|:.:..:.|....|:|
 Worm   404 LLIVTHRLLRNCYVDLHPLSELVVKLVNVVANQNADEINRTLEKLKLRARML 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 27/81 (33%)
zf-MYND 60..97 CDD:460312
TPR_12 <383..441 CDD:315987 3/14 (21%)
set-3NP_499143.1 SET_SMYD4 13..293 CDD:380934 26/79 (33%)
Blue background indicates that the domain is not in the aligned region.

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