DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smyd3 and LOC1271020

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_061514761.1 Gene:LOC1271020 / 1271020 VectorBaseID:AGAMI1_009640 Length:337 Species:Anopheles gambiae


Alignment Length:400 Identity:77/400 - (19%)
Similarity:133/400 - (33%) Gaps:158/400 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 YCHRSCQMQAWGQ-HKHECPFLKKVH-----PRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGS 138
            ||...|..:|:|: |::||..|:.:.     ..|:  |.||:...|...::  ||          
Mosquito     2 YCSEECISKAYGKYHRYECGVLRDLWTVLGISGVI--ALRMIAIAITTFDN--DL---------- 52

  Fly   139 RKFRDLMSHYAEIKNDPMRLEH--------LDSLHAVLTDMMAES-------------------- 175
            .|.:|.:....|.|.|...::.        .:::|.:.|:....:                    
Mosquito    53 EKLKDHLDALDESKVDGFTMDWKKATPQDVFNTVHVLCTNQERRNIKELAGLTFFTVVMHNHLLE 117

  Fly   176 -----PSTVPNKT------ELMSIYGRLITNGFNIL--------DAEMNSIATAIYLGVSITDHS 221
                 |:...|.|      :|:..|.::....:.:|        :.|..:.||:.|..:|:.:||
Mosquito   118 WTELGPACEANPTASKLLLDLILRYLQITECNYKLLTCIKITNRNPEDETFATSCYPLISMLNHS 182

  Fly   222 CQPN-----------AVATF----EGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKE 271
            |.||           ||...    :|.:|    .::.|...|:|          ..::|::.|..
Mosquito   183 CAPNVRRLILPDGRCAVIVIHTVAKGGQL----FDNYEVDHWTK----------DRKKRQIILPF 233

  Fly   272 HYYFLCVCSKCT-DAKESKEMLAALCPNRN---------------CGAGISVDRNNCPRCDAGIS 320
            .|.|.|.|..|. |...||      |...:               |||..|.|:.          
Mosquito   234 FYQFQCTCDACIYDYPSSK------CVEESNDGTKAAFFIDFLQICGAAQSFDKK---------- 282

  Fly   321 PKLRNAFNEAMTLTRHNLENMKDVAYLD--VCKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEV- 382
             ||.|     |.|...:..|:....|.:  ||                  :|.::  ||..:.. 
Mosquito   283 -KLLN-----MMLKLRSFLNVTPQPYAEPIVC------------------IKRIE--FECTVVTL 321

  Fly   383 -GKWSDALDY 391
             |:.|:::.|
Mosquito   322 YGQISESVKY 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 53/272 (19%)
zf-MYND 60..97 CDD:460312 6/17 (35%)
TPR_12 <383..441 CDD:315987 2/8 (25%)
LOC1271020XP_061514761.1 None

Return to query results.
Submit another query.