DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and smyd1

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_012811600.1 Gene:smyd1 / 100145429 XenbaseID:XB-GENE-978314 Length:491 Species:Xenopus tropicalis


Alignment Length:456 Identity:107/456 - (23%)
Similarity:198/456 - (43%) Gaps:64/456 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GQRILTEKPFAFVLKSQYRLERCDNCLE-ATKVLKCSNCRYVSYCHRSCQMQAWGQHKHECPFLK 101
            |..|..|..::.|:........|.:|.: ..|:|:|..|::..||.|:||.::|..||:||..:|
 Frog    25 GDIIFAEPAYSAVVFDNLSHSVCHSCFKRQEKLLRCGQCKFAHYCDRTCQKESWANHKNECVAIK 89

  Fly   102 KVHPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAEIKNDPMRLEHLDSLH- 165
            |. .:...:..|:..|::.|:|..|..:    ||.......||.:|          ::..|... 
 Frog    90 KA-GKAPNENIRLAARILWRIEREGSGL----TEGCLVSIDDLQNH----------IDKFDEAEK 139

  Fly   166 AVLTDMMAESPSTVPNKTE------LMSIYGRLITNGFNILDAE-MNSIATAIYLGVSITDHSCQ 223
            .:|.:.:.:.....|::::      :..|:..:..|||.:.|.. :.::...|:..:.:.:|.|.
 Frog   140 GLLMEDVQKFLEYWPSQSQQFGMQYISHIFSVISCNGFTLSDQRGLQAVGVGIFPNLCLANHDCW 204

  Fly   224 PNAVATF-EGNE------LHVHAIEDMECL----DWSKIFISYIDLLNTPEQRRLDLKEHYYFLC 277
            ||....| .||.      .|.....::..|    ...::.:||:|.||..|.|:..||:.|||.|
 Frog   205 PNCTVIFNNGNHEAVRSMFHTQMRIELRALGKINKGEELTVSYVDFLNLTEDRKAQLKKQYYFDC 269

  Fly   278 VCSKCTDAKESKEMLAALCPNRNCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMK 342
            .|..||  |::|:.|.           ::|.       |....|:.| ...|.:..::..:|.::
 Frog   270 TCEHCT--KKTKDALL-----------LAVK-------DGEDKPEER-VVKEVIQYSKDTMEKIE 313

  Fly   343 ----DVAYLDV---CKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFR 400
                :..|.||   |:.||.:|..:|...|::.::.|....|....:..:.||.:..::::.|:.
 Frog   314 KARSEGLYNDVVKLCRDCLKRQEPIFADTNIYMLRILSIYSEVLSYLQMFDDAAENAKKMVDGYL 378

  Fly   401 KYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHRLLTEQLYMLVLQARQ 465
            |.:...|..||:..|:.|....:.|..:.....:.:|..||.:|||..|. :|:.|.::..|...
 Frog   379 KIYHQNNAQLGMAVMRAGVTHWHAGMIEVGHGMICKAFAILLITHGPLHP-ITKDLEVMRAQTEM 442

  Fly   466 E 466
            |
 Frog   443 E 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 65/265 (25%)
zf-MYND 60..97 CDD:460312 14/37 (38%)
TPR_12 <383..441 CDD:315987 11/57 (19%)
smyd1XP_012811600.1 SET_SMYD1 2..276 CDD:380924 66/267 (25%)
zf-MYND 47..85 CDD:460312 14/37 (38%)

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