Protein Alignment Hnf4 and nhr-65

DIOPT Version :9

• Sequence 1: NP_723413.1
• Gene: Hnf4 / 44544
• FlyBaseID: FBgn0004914
• Length: 732
• Species: Drosophila melanogaster
• Sequence 2: NP_001024219.1
• Gene: nhr-65 / 180230
• WormBaseID: WBGene00003655
• Length: 401
• Species: Caenorhabditis elegans
• Alignment Length: 392
• Identity: 85/392 - (21%)
• Similarity: 147/392 - (37%)
• Gaps: 81/392 - (20%)

  Fly   166 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKC 230
            ||..|.:|||...|.|:||.:|..|..||||:..:      :|.|.|........:|:.|||::|
 Worm     9 SPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASR------KFLRKCENHLIFALKCKNCRLQRC 67

  Fly   231 FKAGMKKEAVQNERDRISCRR--------------------TSNDDPD----PGNGLSVISLV-K 270
            ::|||..|..|..||.|..:.                    ....||:    ..|.:..:.|: |
 Worm    68 YEAGMSSENFQFCRDLIGAKGAIPKLKVPKSFEQTVGRPYFVLQCDPEVLFLRRNIIDCVPLLEK 132

  Fly   271 AENESRQSKAGAAMEPN----INEDLSNKQFASINDV--CESMKQQ---------LLTLVEWAKQ 320
            ||..............|    :.:.|...|.|..|.|  .:.|.|:         .|...:|...
 Worm   133 AEKLIEFGSESPVFSKNRLLKLAQGLQQFQDAKSNQVKFVQKMGQKEIMSFFETDFLCATKWFTY 197

  Fly   321 IPAFNELQLDDQVALLRA--HAGEHL-LLGLS----RRSMHLKDVLLLSNN-----CVITRHCPD 373
            :..|..|..:.|:.|::.  |....| .|.:|    ||.:..|:.:::|:.     |.:.....|
 Worm   198 LDEFQFLDKNQQLTLMQGIWHVWSRLHKLAVSAMGRRRGICDKNTVMVSHQNEFAVCDLNEIEVD 262

  Fly   374 PLVSPN---------LDISRIG--ARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPH 427
            .....|         ||.|...  .:::||::. :|...::.:...|...|.:.....:|
 Worm   263 MSWCTNFSNEQMRYFLDTSHDSYVYQVMDEMLG-LKPNDVELSYMMCQLCLQYAGQRFQG----- 321

  Fly   428 RIKSLRHQILNNLED-----YISD-RQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIFGVAH 486
            .|.....::|..|.|     |:.. |......|..:::.|...::....:|.::.:.:::|.:..
 Worm   322 EILEFCEKMLGFLADDLHSYYVKQLRMPNYAARLAKLMKINNRIKVDMLKMRQRQEISRVFDIWT 386

  Fly   487 ID 488
            ||
 Worm   387 ID 388

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hnf4	NP_723413.1	NR_DBD_HNF4A	170..245	CDD:143518	27/74 (36%)
		NR_LBD_HNF4_like	264..494	CDD:132729	50/270 (19%)
nhr-65	NP_001024219.1	NR_DBD_like	13..75	CDD:295381	25/67 (37%)
		Hormone_recep	165..375	CDD:278530	39/215 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000