DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Surf1 and Surf4

DIOPT Version :10

Sequence 1:NP_524758.1 Gene:Surf1 / 44498 FlyBaseID:FBgn0029117 Length:300 Species:Drosophila melanogaster
Sequence 2:NP_001029040.1 Gene:Surf4 / 619346 RGDID:1561980 Length:269 Species:Rattus norvegicus


Alignment Length:78 Identity:18/78 - (23%)
Similarity:29/78 - (37%) Gaps:17/78 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 NKQLSTAPVALPDDLTDLAQMEYRLVKIRGRFLHDKEMRLGPRSLIRPDGVETQGGLFSQRDS-- 158
            |..:.||     :|..|      :.:::..::| ....||...|....||:........|||.  
  Rat     4 NDLMGTA-----EDFAD------QFLRVTKQYL-PHVARLCLISTFLEDGIRMWFQWSEQRDYID 56

  Fly   159 ---GNGYLIVTPF 168
               ..|||:.:.|
  Rat    57 TTWSCGYLLASSF 69

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Surf1NP_524758.1 SURF1 74..289 CDD:119401 18/78 (23%)
Surf4NP_001029040.1 SURF4 4..269 CDD:111019 18/78 (23%)

Return to query results.
Submit another query.