DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and GB2

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_195311.1 Gene:GB2 / 829740 AraportID:AT4G35860 Length:211 Species:Arabidopsis thaliana


Alignment Length:189 Identity:80/189 - (42%)
Similarity:125/189 - (66%) Gaps:6/189 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |...|.::||::|||||.|:.:|.:.:|...||:|||::|.::::.|||...|:.:|||||.|.|
plant     4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIWDTAGQESF 68

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130
            ||:|.|:||.|.||:||||||.|::...|.:||.:...:: |||::|:::|||.|  .:|.|.:|
plant    69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NPNMSIMLIGNKCDLAHKRAVSKE 132

  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKI---VSSEYFNNGNASAGLDIASDR 186
            ||::||::|..||:|.||:..|.|.:.|.:...||   :....|:..|.|:|:.|...|
plant   133 EGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSNESSGIKIGYGR 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 71/160 (44%)
GB2NP_195311.1 PLN03108 1..210 CDD:178655 80/189 (42%)

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