DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab18 and rab12

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001018466.1 Gene:rab12 / 553657 ZFINID:ZDB-GENE-050522-555 Length:235 Species:Danio rerio


Alignment Length:169 Identity:63/169 - (37%)
Similarity:110/169 - (65%) Gaps:4/169 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAER 66
            ||..:::::||..||||:||:.||.::.|.:....|:|:|||.|.:::.|...::.:|||||.||
Zfish    32 ADYKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 96

  Fly    67 FRSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDR 129
            |.|:|.::||.|.|.:||||||.:::...|..|:..:|.|: :.:..:::||||:|  .:|.:.|
Zfish    97 FNSITSAYYRGAKGIVLVYDITKQETFEDLPKWMKMIDKYA-SEDAELLLVGNKLDCESDRAISR 160

  Fly   130 EEGRKFARKHRAL-FIETSAKCDQFVSDVFKDVVEKIVS 167
            ::..:||.:...: |.|.|||.:..|.::|..:|:.|:|
Zfish   161 QQAERFASRISGMRFCEASAKDNFNVDEIFLKLVDDILS 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 59/161 (37%)
rab12NP_001018466.1 Rab12 36..235 CDD:206699 61/165 (37%)

Return to query results.
Submit another query.