DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and nck1

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001008101.1 Gene:nck1 / 493463 XenbaseID:XB-GENE-6085807 Length:377 Species:Xenopus tropicalis


Alignment Length:87 Identity:27/87 - (31%)
Similarity:51/87 - (58%) Gaps:9/87 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KWYHGNLSREAADELLKQGYEDGTFLVRESSTAAGDFVLSLLCQGEVCHYQVRRHGGEDAFFSID 73
            :||:|.::|..|:..|.:...:|.||:|:|.::..||.:||..||:..|::|:.   :|..:.|.
 Frog   281 QWYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQM---KDCMYCIG 342

  Fly    74 D-KVQTKILHGLDTLVDYYQQA 94
            . |..|     ::.||::|::|
 Frog   343 QRKFST-----MEELVEHYKKA 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210 25/82 (30%)
ANKYR <94..317 CDD:440430 1/1 (100%)
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
SH2_Cterm_shark_like 287..395 CDD:198211
PTKc_Syk_like 666..926 CDD:270650
nck1NP_001008101.1 SH3_Nck1_1 4..62 CDD:212833
SH3_Nck1_2 108..162 CDD:212834
SH3_Nck1_3 193..249 CDD:212837
SH2_Nck1 280..376 CDD:198271 27/87 (31%)
Blue background indicates that the domain is not in the aligned region.

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