DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and Abl1

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001094320.1 Gene:Abl1 / 311860 RGDID:1584969 Length:1143 Species:Rattus norvegicus


Alignment Length:525 Identity:146/525 - (27%)
Similarity:248/525 - (47%) Gaps:71/525 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   443 QHPHVPALTITKKKQKENSS-------SMF-NTLRLTSPKKALFDMNSLRKNKSKGKRSDSESSV 499
            :.|.:|||...|...|.:||       ::| ....|..|..:.|:...|    |:..|.:|:.::
  Rat    13 RRPSLPALHFIKGAGKRDSSRHGGPHCNVFVEHEALQRPVASDFEPQGL----SEAARWNSKENL 73

  Fly   500 SGSLAGTEQ----------ELQAAAPMLKSLSFSTEFST--FNADGVTGSGAAAAGEVYNVPRNN 552
               |||..:          :..|:.....|::...:...  :|.:|.........|:.: ||.|.
  Rat    74 ---LAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGW-VPSNY 134

  Fly   553 -TPIEIDLP-------PIAQKTEAEVEYFTKSDV---AIERE---RAGQ------WIGNGYQPTM 597
             ||:. .|.       |:::..   .||...|.:   .:.||   ..||      :.|..|...:
  Rat   135 ITPVN-SLEKHSWYHGPVSRNA---AEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 195

  Fly   598 DVLSLLDQQIKAPAVARLNSLGPNASTESEMA----SYLHRKCSGTPSTPSATEVEAAKLRFFIE 658
            :..|  |.::...:.:|.|:|.......|.:|    :.||.. :...:.|:...|.....::.:|
  Rat   196 NTAS--DGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYP-APKRNKPTIYGVSPNYDKWEME 257

  Fly   659 PEKLVLDREIGHGEFGSVHSG-WLLRKSGAGEESRLEVAIKMLSDEHSNKQEFLREASVMMRLEH 722
            ...:.:..::|.|::|.|:.| |        ::..|.||:|.|.::....:|||:||:||..::|
  Rat   258 RTDITMKHKLGGGQYGEVYEGVW--------KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 314

  Fly   723 KCIVRLIGIAKGE-MLMMVQELAPLGSMLQYILDHGHEITANAELKVWASQIACGMHYLESQHFV 786
            ..:|:|:|:...| ...::.|....|::|.|:.:...:..:...|...|:||:..|.|||.::|:
  Rat   315 PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFI 379

  Fly   787 HRDLAARNILLTARHQAKISDFGMSRSLRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSHASDVW 851
            ||||||||.|:...|..|::|||:|| |..|.| |....|.::||:|.||||.....||..||||
  Rat   380 HRDLAARNCLVGENHLVKVADFGLSR-LMTGDT-YTAHAGAKFPIKWTAPESLAYNKFSIKSDVW 442

  Fly   852 SFGVTIWEMFSLGAPPYGEISNVDAIKLVDSGERLPQPNLCPAYIYAVMQSCWKERPKDRPTFVY 916
            :|||.:||:.:.|..||..|......:|::...|:.:|..||..:|.:|::||:..|.|||:|..
  Rat   443 AFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAE 507

  Fly   917 LTEFF 921
            :.:.|
  Rat   508 IHQAF 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
ANKYR <94..317 CDD:440430
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
SH2_Cterm_shark_like 287..395 CDD:198211
PTKc_Syk_like 666..926 CDD:270650 94/258 (36%)
Abl1NP_001094320.1 SH3_Abl 84..137 CDD:212784 8/53 (15%)
SH2_ABL 142..235 CDD:198189 19/97 (20%)
PTKc_Abl 254..516 CDD:270645 95/269 (35%)
FABD 1019..1143 CDD:197885
Blue background indicates that the domain is not in the aligned region.

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