DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and nck-1

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001361996.1 Gene:nck-1 / 180690 WormBaseID:WBGene00006410 Length:397 Species:Caenorhabditis elegans


Alignment Length:109 Identity:34/109 - (31%)
Similarity:56/109 - (51%) Gaps:19/109 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PMK---WYHGNLSREAADELLKQGYEDGTFLVRESSTAAGDFVLSLLCQGEVCHYQVRRHGGEDA 68
            ||:   ||.|.:|||.|::||..|.| |.||||:|.:..||..:|:.......|::|:       
 Worm   297 PMEQQPWYFGRISRERAEDLLLHGRE-GEFLVRDSESNPGDLSISMRGIERNKHFKVQ------- 353

  Fly    69 FFSIDD--KVQTKILHGLDTLVDYYQQA-ANGLPTK---LTVPL 106
              ::|.  |:..:....::.|:::|..: ....||:   ||.||
 Worm   354 --NVDGLLKIGNRTFVDMNALINHYTTSPIFSSPTEKLFLTGPL 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210 26/87 (30%)
ANKYR <94..317 CDD:440430 6/17 (35%)
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
SH2_Cterm_shark_like 287..395 CDD:198211
PTKc_Syk_like 666..926 CDD:270650
nck-1NP_001361996.1 SH3_Nck_1 5..55 CDD:212699
SH3_Nck_2 118..171 CDD:212700
SH3_Nck_3 217..272 CDD:212701
SH2_Nck_family 301..392 CDD:198196 28/100 (28%)
Blue background indicates that the domain is not in the aligned region.

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