DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and nck1b

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:XP_002666641.1 Gene:nck1b / 100334953 ZFINID:ZDB-GENE-090317-1 Length:381 Species:Danio rerio


Alignment Length:86 Identity:25/86 - (29%)
Similarity:50/86 - (58%) Gaps:7/86 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KWYHGNLSREAADELLKQGYEDGTFLVRESSTAAGDFVLSLLCQGEVCHYQVRRHGGEDAFFSID 73
            :||:|.::|..|:..|.|...:|.||:|:|.::..||.:||..|.:..|::|:.   :|..:.|.
Zfish   283 QWYYGKVTRHQAEVALNQRGSEGDFLIRDSESSPNDFSISLKAQSKNKHFKVQL---KDNLYCIG 344

  Fly    74 DKVQTKILHGLDTLVDYYQQA 94
            .:.    .:.::.||::|::|
Zfish   345 QRK----FNTMEELVEHYKKA 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210 23/81 (28%)
ANKYR <94..317 CDD:440430 1/1 (100%)
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
SH2_Cterm_shark_like 287..395 CDD:198211
PTKc_Syk_like 666..926 CDD:270650
nck1bXP_002666641.1 SH3_Nck1_1 3..61 CDD:212833
SH3_Nck1_2 109..163 CDD:212834
SH3_Nck1_3 194..250 CDD:212837
SH2 282..378 CDD:472789 25/86 (29%)
Blue background indicates that the domain is not in the aligned region.

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