DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pie and TCF20

DIOPT Version :9

Sequence 1:NP_001260348.1 Gene:pie / 44315 FlyBaseID:FBgn0005683 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001365347.1 Gene:TCF20 / 6942 HGNCID:11631 Length:1960 Species:Homo sapiens


Alignment Length:246 Identity:49/246 - (19%)
Similarity:79/246 - (32%) Gaps:89/246 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 DVERRIAE------GPA-----------RTTEETNADGDNQVDGSFYVQ-----KLGPDAATRSL 325
            |:|:|..|      .||           |::||.....|::|....:.:     |..|.|.|.:.
Human  1404 DIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGSVDDKVKTETHAETVTAGKEPPGAMTSTT 1468

  Fly   326 TQTPVFSE-EDESERSSNITVIFSQPKSNATSERLSLSPPQEEMIVEIPDSPEASPKTSIDENH- 388
            :|.|..:: ..:........:||...|:         .||...:      :|||:||....||. 
Human  1469 SQKPGSNQGRPDGSLGGTAPLIFPDSKN---------VPPVGIL------APEANPKAEEKENDT 1518

  Fly   389 ---SP------------------QPIARRDTSDSPQPIAASEIPDSPQPTAASEIPDLPQTTA-- 430
               ||                  :||.    |.:.|.......|..|||      |.:|:.:|  
Human  1519 VTISPKQEGFPPKGYFPSGKKKGRPIG----SVNKQKKQQQPPPPPPQP------PQIPEGSADG 1573

  Fly   431 -----------------INVNPELTQQTALNTIPHSPQPEASFSTQLVSQT 464
                             .......|:|......|..|:.:..::||.:.:|
Human  1574 EPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEPEIKLKYATQPLDKT 1624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pieNP_001260348.1 PHD_SF 9..117 CDD:304600
PHD_SF 224..>260 CDD:304600
PARM 318..>491 CDD:293666 37/189 (20%)
TCF20NP_001365347.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..287
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 305..328
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 360..392
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 476..748
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 920..1037
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1110..1142
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1162..1285
Leucine-zipper 1170..1191
Nuclear localization signal. /evidence=ECO:0000250 1254..1268
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1303..1331
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1384..1607 44/227 (19%)
Nuclear localization signal. /evidence=ECO:0000250 1576..1600 1/23 (4%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1660..1683
ePHD_TCF20 1705..1932 CDD:277169
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1732..1839
Nuclear localization signal. /evidence=ECO:0000250 1785..1792
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1939..1960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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