DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pie and phf11

DIOPT Version :9

Sequence 1:NP_001260348.1 Gene:pie / 44315 FlyBaseID:FBgn0005683 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_021334650.1 Gene:phf11 / 569187 ZFINID:ZDB-GENE-081104-417 Length:531 Species:Danio rerio


Alignment Length:520 Identity:118/520 - (22%)
Similarity:185/520 - (35%) Gaps:153/520 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CLICKYSDTDDLVFGEWMIVRNLQVHYFCLLLSTHLPQRGGDS-SGILGFLLRDIREEAAAAEKR 72
            |.:||.||..:.. |......::..|..|||.|:::..:...: ..:.||.|.|:::|....:|.
Zfish    14 CALCKTSDETETT-GPLSSKEDISAHQNCLLFSSNIYCKNSPTYDDLFGFDLEDVKKEQRRGQKL 77

  Fly    73 KCWYCNKIGASLQCD--RCRSLFHLKCGL--ENRAVFEF-CGQYKSYCYKCRP--------MDD- 123
            :|::|||.||::.|:  ||...||..|.:  :.||:.:| .|.|:.||....|        :|: 
Zfish    78 RCYFCNKTGATVGCEIKRCPRSFHYPCAIKADARAIEDFSTGTYRVYCKSHDPNPIEINDEIDND 142

  Fly   124 -------------YKRQLQSNPPRNATCPICFSSIYKVELHCVVYG----DCCRLGFAHKKCMRQ 171
                         .::..||.|....|.|   |...|........|    |....|.|.|     
Zfish   143 VDLVLASVEKHVPAEQHNQSTPDPERTRP---SEEVKTPAKASSNGGLTSDQRSCGTADK----- 199

  Fly   172 YALTSGYYLRCIWCRSE----------RFRDSIRLQSVFVPDR------DATWEKQRNAYRELHE 220
                     |.|.|.|:          :.:...||:   .||.      ||....:.:|    .|
Zfish   200 ---------RRIECDSQEHSPEHKTPTKKKKKRRLE---YPDNENPTSADAVMAPEVSA----PE 248

  Fly   221 RNLKCDQPNCLCP---SGRTYNRLSWVILCCSSCAATSAHLKCLVGALRLPKKRERTDFKCSMCL 282
            .::..:|||...|   :.|:..:|:   |..:..||..              :.:.||.: |:.|
Zfish   249 ESMTVNQPNHSTPLPENTRSCEKLN---LSTTGAAADD--------------EDDETDIE-SVSL 295

  Fly   283 DV-----ERRIAEGPARTTEETNADGDNQVDGSFYVQKLGPDAATRSLTQTPVFSEEDESERSSN 342
            .|     .|.|.|..:..|.||:                 |......|...|....|...|..| 
Zfish   296 SVLNKTHLRHIEESQSVLTYETD-----------------PVPCIVILDSGPSLESEISLESCS- 342

  Fly   343 ITVIFSQPKSNATSERLSLSPPQEEMIVEIPDSPEASP--KTSIDENHSPQPIA--RRDTSDSPQ 403
                             |.:|......|.:|...:.:|  :||..:..:||..|  ::..||.| 
Zfish   343 -----------------SRNPSPAHEFVTVPKQEKITPTDRTSPAQTVTPQVPAPNQKRVSDGP- 389

  Fly   404 PIAASEIPDSPQPTAA---SEIPDLPQTTAINVN------PELTQQTALNTIPHSPQPEASFSTQ 459
                |..|..|.|||.   |.:..|.| :||...      .|::...:.:|:|:.....|.|.|:
Zfish   390 ----SVSPQHPSPTAGLRISAVCTLAQ-SAIKKEQLSDPPAEVSTSDSQSTVPNCQTRAAKFWTR 449

  Fly   460  459
            Zfish   450  449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pieNP_001260348.1 PHD_SF 9..117 CDD:304600 36/113 (32%)
PHD_SF 224..>260 CDD:304600 9/38 (24%)
PARM 318..>491 CDD:293666 36/155 (23%)
phf11XP_021334650.1 ePHD_PHF6_like 14..128 CDD:277143 36/114 (32%)
Herpes_BLLF1 <228..445 CDD:330317 59/279 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12420
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
43.870

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