DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Vha16-1 and atp5mc3b

Sequence 1:NP_476801.1 Gene:Vha16-1 FlyBaseID:FBgn0262736 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_571836.1 Gene:atp5mc3b ZFINID:ZDB-GENE-020814-1 Length:140 Species:Danio rerio

Alignment Length:142 Identity:37/143 (26%)
Similarity:65/143 (45%) Gaps:26/143 (18%)


  Fly    24 AIIFSALGAAYGTAKSGTGIAAMSVMRPEL----IMKSIIPVVMAGIIAIYGLVVAVLIAGALEE 84
            |::.|...|.|      ..::|..:.||::    ...:.:|......:|:.|...:. |:..::.
Zfish    12 ALVRSGSRALY------RPLSASVLSRPDVSSAEASPAFLPQTAGSQVAVRGFQTSA-ISRDIDT 69

  Fly    85 PSKYSLYRGFIHLGAGLA-VGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEV 144
            .:|:        :|||.| ||.:|..||  ||.|..:.:.|.|:.|    :||...||....:|.
Zfish    70 AAKF--------IGAGAATVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 124

  Fly   145 LGLYGLIVAIYL 156
            :||:.|:||..:
Zfish   125 MGLFCLMVAFLI 136

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Vha16-1NP_476801.1 PRK06558 13..159 CDD:235830 37/143 (26%)
V_ATP_synt_C 15..122 CDD:130170 24/103 (23%)
ATP-synt_C 96..156 CDD:278563 25/65 (38%)
atp5mc3bNP_571836.1 ATP9 66..140 CDD:164765 26/82 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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