DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha16-1 and atp5mc1

DIOPT Version :10

Sequence 1:NP_476801.1 Gene:Vha16-1 / 44307 FlyBaseID:FBgn0262736 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_998193.1 Gene:atp5mc1 / 406301 ZFINID:ZDB-GENE-040426-1966 Length:138 Species:Danio rerio


Alignment Length:114 Identity:32/114 - (28%)
Similarity:56/114 - (49%) Gaps:17/114 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 RPELIMK--SIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLA-VGFSGLAAG 111
            |||...:  :::||..|.::.:.......:.:..::..:|:        :|||.| ||.:|..||
Zfish    31 RPEARSEQAALLPVSEAALLNLTRGFQTSVASRDIDTAAKF--------IGAGAATVGVAGSGAG 87

  Fly   112 FAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIVAIYL 156
              ||.|..:.:.|.|:.|    :||...||....:|.:||:.|:||..:
Zfish    88 --IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha16-1NP_476801.1 V_ATP_synt_C 15..122 CDD:130170 19/74 (26%)
ATP-synt_Vo_c_ATP6C_rpt2 90..157 CDD:349416 25/72 (35%)
atp5mc1NP_998193.1 ATP9 64..138 CDD:164765 26/81 (32%)

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