DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Vha16-1 and Atp5mc3

Sequence 1:NP_476801.1 Gene:Vha16-1 FlyBaseID:FBgn0262736 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_001348329.1 Gene:Atp5mc3 RGDID:620052 Length:141 Species:Rattus norvegicus

Alignment Length:65 Identity:25/66 (38%)
Similarity:36/66 (55%) Gaps:7/66 (11%)


  Fly    97 LGAGLA-VGFSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIVAIYL 156
            :|||.| ||.:|..||  ||.|..:.:.|.|:.|    :||...||....:|.:||:.|:||..:
  Rat    75 IGAGAATVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 137

  Fly   157  156
              Rat   138  137

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Vha16-1NP_476801.1 PRK06558 13..159 CDD:235830 25/66 (38%)
V_ATP_synt_C 15..122 CDD:130170 12/26 (46%)
ATP-synt_C 96..156 CDD:278563 25/64 (39%)
Atp5mc3NP_001348329.1 ATP9 67..141 CDD:164765 25/66 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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