DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and ROX1

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_015390.1 Gene:ROX1 / 856178 SGDID:S000006269 Length:368 Species:Saccharomyces cerevisiae


Alignment Length:457 Identity:96/457 - (21%)
Similarity:162/457 - (35%) Gaps:142/457 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 RVKRPMNAFMVWSRGQRRKMASDNPKM-----HNSEISKRLGAQWKDLSESEKRPFIDEAKRLRA 237
            ::.||.|||:::.:...|.:..:....     |||.|||.:|.:||.|...:|..:.:.|::.:.
Yeast     9 KIPRPKNAFILFRQHYHRILIDEWTAQGVEIPHNSNISKIIGTKWKGLQPEDKAHWENLAEKEKL 73

  Fly   238 VHMKEHPDYKYRPRRKTK---TLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSL 299
            .|.:::|:|||:|.||:|   .|.|..|:                          |.|..|.:. 
Yeast    74 EHERKYPEYKYKPVRKSKKKQLLLKEIEQ--------------------------QQQQQQKEQ- 111

  Fly   300 NGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMM---HA-DPAGAAAYQTSYMGQ-HY 359
                              ||.:|...|:..|  :..|..:|   |: .|:.:.:...||..| :.
Yeast   112 ------------------QQQKQSQPQLQQP--FNNNIVLMKRAHSLSPSSSVSSSNSYQFQLNN 156

  Fly   360 AAQRYDMGHMYNNGYAMYQTVSG------------GQTS------PYGSSLQQPGSPSPYGGSSL 406
            ..:|..:..:..:.|.:.:::||            .|.|      ||.|:...|.:...|...:.
Yeast   157 DLKRLPIPSVNTSNYMVSRSLSGLPLTHDKTARDLPQLSSQLNSIPYYSAPHDPSTRHHYLNVAQ 221

  Fly   407 QQQPGSPTP----YGGGGGGGGQVSCQSHSPSDSSIKSEP--VSPSPSAIALNNN--NNINNNHI 463
            .|...:.||    .........|....:.:.|.::..|.|  .|.||::..|.||  |:|||:  
Yeast   222 AQPRANSTPQLPFISSIINNSSQTPVTTTTTSTTTATSSPGKFSSSPNSSVLENNRLNSINNS-- 284

  Fly   464 MKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPDEQRHLLHYQTDSPDLQQQHQSMQQQQQH 528
                                          |.|..|.....|..:|.|      |:|.::|....
Yeast   285 ------------------------------NQYLPPPLLPSLQDFQLD------QYQQLKQMGPT 313

  Fly   529 LPQQHLSQQHQQI-----PQQHHTMQQQQQQHHLQHQQSLRAMAPLAHMXEMASAYGAAGSSVSV 588
            ...:.||.....:     |..||.       .|:.:|.     .||..:...::....|.:|: |
Yeast   314 YIVKPLSHTRNNLLSTTTPTHHHI-------PHIPNQN-----IPLHQIINSSNTEVTAKTSL-V 365

  Fly   589 SP 590
            ||
Yeast   366 SP 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 24/78 (31%)
ROX1NP_015390.1 HMG-box_ROX1-like 10..86 CDD:438791 23/75 (31%)

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