Protein Alignment SoxN and HMGB3

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_001031075.1
• Gene: HMGB3 / 838659
• AraportID: AT1G20696
• Length: 147
• Species: Arabidopsis thaliana
• Alignment Length: 94
• Identity: 27/94 - (28%)
• Similarity: 48/94 - (51%)
• Gaps: 4/94 - (4%)

  Fly   177 DRVKRPMNAFMVWSRGQRRKMASDNPKMHN-SEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHM 240
            ::.|||.:||.|:....|.....::||..: :.:.|..|.:||.||:|||.|::.:|.:.:..:.
plant    33 NKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYE 97

  Fly   241 KEHPDYKYR---PRRKTKTLTKTKEKYPM 266
            |....|..:   ..||.:.||...::..|
plant    98 KNMKAYNKKLVIALRKMRNLTSQFQRLTM 126

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	22/78 (28%)
HMGB3	NP_001031075.1	HMG-box_AtHMGB1-like	36..96	CDD:438821	20/59 (34%)