Protein Alignment SoxN and HMGB2

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_564123.1
• Gene: HMGB2 / 838658
• AraportID: AT1G20693
• Length: 144
• Species: Arabidopsis thaliana
• Alignment Length: 106
• Identity: 27/106 - (25%)
• Similarity: 49/106 - (46%)
• Gaps: 14/106 - (13%)

  Fly   155 LTGGSSNNNNNSATANKNQQHA-------------DRVKRPMNAFMVWSRGQRRKMASDNPKMHN 206
            :.|..|.....|:..:..::.|             ::.|||.:||.|:....|.....:|||..:
plant     1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKS 65

  Fly   207 -SEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDY 246
             :.:.|..|.:||.||:|||.|::.:|::.:..:.|....|
plant    66 VATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY 106

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	23/71 (32%)
HMGB2	NP_564123.1	HMG-box_AtHMGB1-like	39..99	CDD:438821	21/59 (36%)