DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and HMGB6

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_568431.1 Gene:HMGB6 / 832408 AraportID:AT5G23420 Length:241 Species:Arabidopsis thaliana


Alignment Length:87 Identity:26/87 - (29%)
Similarity:47/87 - (54%) Gaps:15/87 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 SSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRL----GAQWKD 219
            :::...:|:|:||       .|||:.||.::....|:...|:    ||..::|..    |.:||.
plant   102 TNDEKKSSSTSNK-------PKRPLTAFFIFMSDFRKTFKSE----HNGSLAKDAAKIGGEKWKS 155

  Fly   220 LSESEKRPFIDEAKRLRAVHMK 241
            |:|.||:.::|:|..|:|.:.|
plant   156 LTEEEKKVYLDKAAELKAEYNK 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 22/69 (32%)
HMGB6NP_568431.1 HMG-box_AtHMGB1-like 116..175 CDD:438821 21/62 (34%)

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