Protein Alignment SoxN and 3xHMG-box1

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_192846.1
• Gene: 3xHMG-box1 / 826709
• AraportID: AT4G11080
• Length: 446
• Species: Arabidopsis thaliana
• Alignment Length: 199
• Identity: 43/199 - (21%)
• Similarity: 60/199 - (30%)
• Gaps: 86/199 - (43%)

  Fly    67 LTAAHCLEGVSADQVSIRAGSTYKMHGG----VLRNVARVVLHPA--WDP-----VTNEGDIALM 120
            |.|....|..|.:.:.:.|.:|...:.|    :.||:..   |.:  |||     |..|    |:
plant   541 LVAKELCENYSGESLHLLANNTEGYNKGEDVSITRNLGN---HESGLWDPHCCLSVVKE----LL 598

  Fly   121 E---LESPLPLDGDTMASIEMPEQ---DEEDPV-----EGSKALVSGWGKTLNRFHSALILRAT- 173
            :   ...|.|       |:|.|..   ..:|||     |....|:|         |..|.|||.
plant   599 KNCMKSQPYP-------SLEDPHYLFITYQDPVHEGVSEKRSVLLS---------HGKLHLRAVQ 647

  Fly   174 -------------------------FLPIVHRDNCQKAYRRTHTISEMMLCAGFFEGGH---DSC 210
                                     |:||..:.|.:...|...            |.||   .:|
plant   648 DVFQLTSIEMKFGSMWIILTEDGEGFVPITFKHNQEVTIRDAR------------ERGHSRSSTC 700

  Fly   211 QGDS 214
            ..||
plant   701 CADS 704

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	9/41 (22%)
3xHMG-box1	NP_192846.1	PTZ00121	<11..361	CDD:173412
		HMG-box_AtHMGB6-like_rpt1	130..197	CDD:438822
		HMG-box_AtHMGB6-like_rpt2	246..311	CDD:438823
		HMG-box_AtHMGB6-like_rpt3	363..440	CDD:438824