DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and SOX1

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_005977.2 Gene:SOX1 / 6656 HGNCID:11189 Length:391 Species:Homo sapiens


Alignment Length:206 Identity:42/206 - (20%)
Similarity:60/206 - (29%) Gaps:53/206 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 GFPIDISEAPYQISLREGGHP---SCGGSIISPDWILTAAHCLEGVSADQVSIRAGSTYKMHGGV 95
            |.|..::..........|.||   |.||.    .|      |.||      .:..|::....|..
Human     6 GGPSSLASQTQPTVAANGNHPPEHSEGGC----SW------CDEG------RLAPGTSPPTSGKS 54

  Fly    96 LRNVARVVLHPAWDPVTNEGDIALMELESPLP----LDGDTMASIEMPEQDEEDPVEGSKALVSG 156
            |........|....||:     |..:|....|    ..|....|..:|...:..|...    |..
Human    55 LTETVTPPTHSRPCPVS-----ASFQLRGGPPQATAFTGVLAVSSPIPWAPKSAPAYS----VQV 110

  Fly   157 WGKT-LNRFHSALILRATFLPIVHRDNCQKAYRRTHT---ISEMMLCAGF--FEGGHDSCQGDSG 215
            |... ..||..:::              :..||..|.   :.::.....|  .:.....|.|.:.
Human   111 WDTAGQERFRKSMV--------------EHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAV 161

  Fly   216 GPLVVDDVLVG 226
            .|| |..||||
Human   162 PPL-VPKVLVG 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 13/55 (24%)
SOX1NP_005977.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 13/61 (21%)
HMG-box_SoxB 49..128 CDD:438790 16/101 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..249
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 342..350
Blue background indicates that the domain is not in the aligned region.

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