DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and tfam

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001070857.1 Gene:tfam / 571106 ZFINID:ZDB-GENE-061013-552 Length:277 Species:Danio rerio


Alignment Length:125 Identity:31/125 - (24%)
Similarity:55/125 - (44%) Gaps:31/125 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 ATANKNQQHADR--VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFI 229
            |.|.|:...|.|  .|||:.|:|.:.:..:..::..||.:.:.::.:::..|||.|:..:|:|| 
Zfish    33 APAIKSFSTATRGPPKRPLTAYMTFVKDMQPTVSKQNPSIKSVDVMRKIAQQWKMLTTEQKQPF- 96

  Fly   230 DEAKRLRAVHMKEHPDYKY---------------------RPR-RKTKTLTKTKEKYPMG 267
                ::.::..||  .||.                     |.| .|.|.:.|.||...:|
Zfish    97 ----QVASLEAKE--QYKLALEKFKAQLTPAESAAFAEEKRQRVAKRKAIRKKKELNNLG 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 21/98 (21%)
tfamNP_001070857.1 HMG-box_SF 49..107 CDD:438789 15/64 (23%)
HMG-box_TFAM_rpt2 132..231 CDD:438803 7/19 (37%)

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