DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox12

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001025449.3 Gene:sox12 / 562381 ZFINID:ZDB-GENE-040724-33 Length:369 Species:Danio rerio


Alignment Length:209 Identity:76/209 - (36%)
Similarity:105/209 - (50%) Gaps:36/209 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SMANTLNGSQVGQQQQQQQQQQSSPLHSSSELSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHL 146
            ::.|.||.||.....||:..:.||.:.|:|                             .::..:
Zfish     2 TLGNLLNRSQRCIMVQQRTHKYSSVMDSNS-----------------------------SREVFV 37

  Fly   147 GAGSALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISK 211
            |..:...:...|...:|.:.........|   :|||||||||||:.:|||:....|.|||:||||
Zfish    38 GLAAEDDAEVFGHVPSNKDPNWCKTPTGH---IKRPMNAFMVWSQIERRKIMEQWPDMHNAEISK 99

  Fly   212 RLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTK--EKYPMGGL--MPG 272
            |||.:||.|.:.||.|||.||:|||..||.::||||||||:|:|..|..|  ||.||...  :||
Zfish   100 RLGKRWKLLPDYEKIPFIKEAERLRLKHMADYPDYKYRPRKKSKGSTPVKLGEKLPMKSSKPLPG 164

  Fly   273 QTVGGGAPGEPVTP 286
            ::.|....|..:.|
Zfish   165 RSSGLSCKGLKIKP 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 47/74 (64%)
sox12NP_001025449.3 None

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