DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and SOX18

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_060889.1 Gene:SOX18 / 54345 HGNCID:11194 Length:384 Species:Homo sapiens


Alignment Length:311 Identity:96/311 - (30%)
Similarity:136/311 - (43%) Gaps:95/311 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 SATANKNQQHAD--RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 228
            |......:|.||  |::|||||||||::.:|:::|..||.:||:.:||.||..||:|:.:|||||
Human    70 SPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPF 134

  Fly   229 IDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEP---------- 283
            ::||:|||..|:::||:|||||||| |...|.:.      |.||..:.|.||.:|          
Human   135 VEEAERLRVQHLRDHPNYKYRPRRK-KQARKARR------LEPGLLLPGLAPPQPPPEPFPAASG 192

  Fly   284 -------VTPTRVQ----GQPGQNQS-LNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPN 336
                   :.|...:    |.|...:| |:|.....||.....||....|   :....||  |.|.
Human   193 SARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDCA---LRPFRAP--YAPT 252

  Fly   337 GYMMHADPAG------AAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQP 395
              .:..||.|      |.|.:|       |.....:..:|                 ||:.    
Human   253 --ELSRDPGGCYGAPLAEALRT-------APPAAPLAGLY-----------------YGTL---- 287

  Fly   396 GSPSPYGGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEPVSPS 446
            |:|.||.|      |.||.|              ...|.:|   :||:.|:
Human   288 GTPGPYPG------PLSPPP--------------EAPPLES---AEPLGPA 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 42/76 (55%)
SOX18NP_060889.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..88 5/17 (29%)
HMG-box_SoxF_SOX18 82..161 CDD:438851 44/79 (56%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 87..100 9/12 (75%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 111..123 6/11 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..218 22/78 (28%)
Important for transcriptional activation. /evidence=ECO:0000250|UniProtKB:P43680 166..231 15/70 (21%)
Sox17_18_mid 197..245 CDD:463454 11/50 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..312 9/41 (22%)
9aaTAD. /evidence=ECO:0000269|PubMed:17603017 325..333
Blue background indicates that the domain is not in the aligned region.

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