DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Sox102F

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster


Alignment Length:456 Identity:115/456 - (25%)
Similarity:166/456 - (36%) Gaps:163/456 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SPYSALAPLMNLGQSHLTHSQLSHHNHHHHHMSAHIAASQSPNPLSSLQSSMANTLNGSQVGQQQ 96
            ||.....|...|..||.|..:..|..      :|..:.:.||:|..:|           .:....
  Fly   231 SPTYENPPYEILSYSHNTPPESPHGR------TADCSKNFSPSPTDNL-----------SIASVS 278

  Fly    97 QQQQQQQSSPLH-----SSSELSPTQSSIGSH--HMTSPVSH---QQHTQQQQHGQ------QQH 145
            :.|..:..:||:     .|...||..||...|  ::|..||.   ..|..|..:.:      :.|
  Fly   279 EAQDSEMDAPLNLSKPKGSPSSSPNSSSQRDHCENLTPVVSSPPLSWHQGQPHYAEIELPLLKSH 343

  Fly   146 LGAGSALSSLTGGS-----SNNNNNSATANKNQQHA----------------------------- 176
            ....::..:.:|||     |.::.||...|..:..|                             
  Fly   344 GRVWNSAVACSGGSRATRVSRDSVNSCGTNSERSAALDPESLNSGQLGPVPASPSSQPLRQGNGH 408

  Fly   177 ------------DRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFI 229
                        ..:||||||||||::.:|||:....|.||||.|||.|||:||.:|.::|:|:.
  Fly   409 GHGGNHGHVHSKPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYY 473

  Fly   230 DEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKE----KYPM----------------GGLMPGQT 274
            :|..||..:||::||||:||||.|...:...|:    :|.:                ||      
  Fly   474 EEQSRLSKLHMEQHPDYRYRPRPKRTCIVDGKKMRISEYKVLMRNRRAEMRQLWCRTGG------ 532

  Fly   275 VGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYM 339
            |.||:           |....:....|||||.:..|.|||||       :|.:.           
  Fly   533 VSGGS-----------GSLCADACPKGSGGSNSQVAVAAAAA-------VYHLQ----------- 568

  Fly   340 MHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGS 404
               |.|.:||         ..|..:|.||                 :|.......|.|.||.|.|
  Fly   569 ---DMASSAA---------STAHGHDCGH-----------------TPPQQFFYPPESLSPSGFS 604

  Fly   405 S 405
            |
  Fly   605 S 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 41/74 (55%)
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848 42/76 (55%)

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