Protein Alignment SoxN and sox1a

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_001002483.1
• Gene: sox1a / 436756
• ZFINID: ZDB-GENE-040718-186
• Length: 336
• Species: Danio rerio
• Alignment Length: 414
• Identity: 154/414 - (37%)
• Similarity: 194/414 - (46%)
• Gaps: 127/414 - (30%)

  Fly   157 GGSSNNN------NNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGA 215
            |..:|.|      |:.:.||:     ||||||||||||||||||||||.:|||||||||||||||
Zfish    14 GPQTNTNPGQTGPNSGSKANQ-----DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGA 73

  Fly   216 QWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPM-GGLMPGQTVGGGA 279
            :||.:||:||||||||||||||:|||||||||||||||||||.| |:||.: |||:     ||..
Zfish    74 EWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLK-KDKYSLAGGLL-----GGAG 132

  Fly   280 PGEPVTPTRVQGQPGQN-QSLNGSGGSAAA-----------------AAAAAAAAAQQARQDMYQ 326
            .|..::|..|    ||. :|..|.|.||:|                 ||||||||..|..|..|.
Zfish   133 GGVGMSPAGV----GQRLESPGGHGSSASAGYAHMNGWANGTYSGQVAAAAAAAAMMQEAQLAYS 193

  Fly   327 MNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSS 391
            .:..:|    .:..||              .|:........|.|:.....|..:|..|:  |.|:
Zfish   194 QHPGSG----SHHHHA--------------HHHHPHNPQPMHRYDMTALQYSPISNSQS--YMSA 238

  Fly   392 LQQPGSPSPYGGSSLQQQPGS--PTPYGGGGGGGGQVSCQSHSPSDSSIKSEP-VSPSPSAIALN 453
                 |||.|||.|..|...|  .||...|             ...|.:|||| :||..:.
Zfish   239 -----SPSGYGGISYTQHQNSSVATPAAIG-------------TLSSLVKSEPNISPPVTT---- 281

  Fly   454 NNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPDEQRHLLHYQTDSPDLQQQ 518
                          :|.....            |:|..:::|| ||..       ::..|.:|.:
Zfish   282 --------------HSRGPCP------------GDLREMISMY-LPTG-------ESGDPSVQSR 312

  Fly   519 HQSMQQQQQH--------LPQQHL 534
            ..::.|..|.        :|..|:
Zfish   313 LHALPQHYQSTTAGVNGTVPLTHI 336

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	67/74 (91%)
sox1a	NP_001002483.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..39		9/29 (31%)
		HMG-box_SoxB	35..114	CDD:438790	71/78 (91%)
		SOXp	106..>194	CDD:463537	41/97 (42%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	193..216		4/40 (10%)
		9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225	293..301		3/8 (38%)