DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and hmgb2

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_988904.1 Gene:hmgb2 / 394499 XenbaseID:XB-GENE-1000246 Length:212 Species:Xenopus tropicalis


Alignment Length:113 Identity:28/113 - (24%)
Similarity:54/113 - (47%) Gaps:12/113 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 KNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRL 235
            |.::..:..|||.:||.::....|.::.|::|.:...:.:|:||..|.:.:..:|.|:..:|.:|
 Frog    88 KKKKDPNAPKRPPSAFFLFCSEHRPQIKSESPGLSIGDTAKKLGEMWSEQTPKDKLPYEQKAAKL 152

  Fly   236 RAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEP 283
            :..:.|:...|            |.|.|..:|..:||:..|.....||
 Frog   153 KEKYEKDVAAY------------KAKGKSDVGKKVPGRPTGSKKKAEP 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 18/74 (24%)
hmgb2NP_988904.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 94..164 CDD:438795 18/81 (22%)
Blue background indicates that the domain is not in the aligned region.

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