Protein Alignment SoxN and Hmg-2

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_611553.1
• Gene: Hmg-2 / 37407
• FlyBaseID: FBgn0026582
• Length: 376
• Species: Drosophila melanogaster
• Alignment Length: 200
• Identity: 45/200 - (22%)
• Similarity: 77/200 - (38%)
• Gaps: 40/200 - (20%)

  Fly   114 SPTQSSIGSHHMTS----------PVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNNNNNSAT 168
            ||....|.|..|.:          |...::..:..: |:......||.|..|
  Fly    15 SPVSLPIASQSMDTATIEDFDEDKPAKGKKKAKNPK-GRHSDSDIGSELKKL------------- 65

  Fly   169 ANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 233
            |.:....|...|.|:|.::.:...:|.::..:.|:....|.::.:|.:|..|.|..|.|:|:.|.
  Fly    66 AQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGEEWHQLPEERKLPYIEAAA 130

  Fly   234 RLRAVH-------MKEHPDYKYRPRRKTKTLTK----TKEKYPMGGLMPGQTVGGGAPGEPVTPT 287
            :.:|::       :||||:.......|.|..||    .|||.|     .|::..|.|......|.
  Fly   131 KDKAIYQEQLQMFLKEHPEIVANELAKAKKATKLDGSPKEKTP-----KGESALGKAKKTKAKPV 190

  Fly   288 RVQGQ 292
            :.|.:
  Fly   191 KRQSE 195

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	19/81 (23%)
Hmg-2	NP_611553.1	HMG-box_HMG20	75..154	CDD:438796	19/78 (24%)