DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and mat1-Mc

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_595867.1 Gene:mat1-Mc / 2539619 PomBaseID:SPBC23G7.09 Length:181 Species:Schizosaccharomyces pombe


Alignment Length:82 Identity:25/82 - (30%)
Similarity:49/82 - (59%) Gaps:0/82 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 KNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRL 235
            |:....:|..||.|||:::.:.:...:...||.::||::||.:|..|::.|:..:..:...::..
pombe    95 KDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFY 159

  Fly   236 RAVHMKEHPDYKYRPRR 252
            :|.|.|.:|.|||:||:
pombe   160 KAQHQKMYPGYKYQPRK 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 23/74 (31%)
mat1-McNP_595867.1 HMG-box_ROX1-like 104..174 CDD:438791 21/69 (30%)

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