DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Sox5

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:XP_006506994.1 Gene:Sox5 / 20678 MGIID:98367 Length:792 Species:Mus musculus


Alignment Length:443 Identity:105/443 - (23%)
Similarity:166/443 - (37%) Gaps:118/443 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KGSLLHATMPPH-HTSAALHGHAASPYSALAPLMNLGQSHLTHSQLSHHNHHHHHMSAHIAASQS 72
            :|:|..|..|.. ||..:.:.........:|..:||.....|....|..:....||.| :..:..
Mouse   391 QGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPA-LRINSG 454

  Fly    73 PNPL-SSLQSSMAN-TLNGSQVG------------QQQQQQQQQQSSPLHSSSELSPTQSSIGSH 123
            ..|| :|:.:::|: :...|.:|            |:.:|.::|......:........:|||..
Mouse   455 AGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGLS 519

  Fly   124 H------------MTSPVSHQQHTQQQ-QHGQQQHLGAGSALSSLTGGSSNNNNNSATANKNQQH 175
            :            :|..::.:|:.:.: .||......:|.:..|.....|.....|.....|:.|
Mouse   520 NCRTEKEKTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPH 584

  Fly   176 ADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHM 240
               :||||||||||::.:|||:....|.||||.|||.||::||.::..||:|:.:|..||...|:
Mouse   585 ---IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHL 646

  Fly   241 KEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGS 305
            :::|||||:||.|...|...|:      |..|:                                
Mouse   647 EKYPDYKYKPRPKRTCLVDGKK------LRIGE-------------------------------- 673

  Fly   306 AAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMY 370
                   ..|..:..||:|.|      |...|.......|.|                   |.:|
Mouse   674 -------YKAIMRNRRQEMRQ------YFNVGQQAQIPIATA-------------------GVVY 706

  Fly   371 NNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSP---TPYGGGG 420
            .:..||     .|..||:        .||.:...|...:||.|   :.||..|
Mouse   707 PSAIAM-----AGMPSPH--------LPSEHSSVSSSPEPGMPVIQSTYGAKG 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 38/74 (51%)
Sox5XP_006506994.1 HMG-box_EGL13-like 583..660 CDD:438848 40/79 (51%)

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