DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Sox4

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_033264.2 Gene:Sox4 / 20677 MGIID:98366 Length:440 Species:Mus musculus


Alignment Length:399 Identity:119/399 - (29%)
Similarity:171/399 - (42%) Gaps:81/399 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 MTSPVSHQQHTQQQQHGQQQHLGAGSAL---SSLTGGSSNNNNNSA-TANKNQQHADRVKRPMNA 185
            |....::.::|:....|:....|||..|   ||.|.||:.:....| ..:..:..:..:||||||
Mouse     1 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNA 65

  Fly   186 FMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRP 250
            |||||:.:|||:...:|.|||:|||||||.:||.|.:|:|.|||.||:|||..||.::|||||||
Mouse    66 FMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRP 130

  Fly   251 RRKTKT---------LTKTKEKYPMGGLMPGQT-------VGGGAPGE----------PVTPTRV 289
            |:|.|:         ..|..||   |..:.|.:       .||||.|.          |......
Mouse   131 RKKVKSGNAGAGSAATAKPGEK---GDKVAGSSGHAGSSHAGGGAGGSSKPAPKKSCGPKVAGSS 192

  Fly   290 QGQPGQNQSLNGSGGSAAAAAAAAAAAAQQARQD---MYQMNAPNGYMPNGYMMHADPAGAAAYQ 351
            .|:|  :..|..:|||.|||:.:...||.....:   :|::..|:...|   ...:.|:.|.|..
Mouse   193 VGKP--HAKLVPAGGSKAAASFSPEQAALLPLGEPTAVYKVRTPSAATP---AASSSPSSALATP 252

  Fly   352 TSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSPTPY 416
            ..:.......:.|..|.:                         ..|.||.||......|..|...
Mouse   253 AKHPADKKVKRVYLFGSL-------------------------GASASPVGGLGASADPSDPLGL 292

  Fly   417 GGGGGGGGQVSCQSHSPSDSSIKSEPVSPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAA 481
            ...||.|.....:|.|...|:..|...|.||:            :|   |.|:|..||:.|.::|
Mouse   293 YEDGGPGCSPDGRSLSGRSSAASSPAASRSPA------------DH---RGYASLRAASPAPSSA 342

  Fly   482 AAAGGGELN 490
            .:.....|:
Mouse   343 PSHASSSLS 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 47/74 (64%)
Sox4NP_033264.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 13/56 (23%)
HMG-box_SoxC 58..133 CDD:438838 48/74 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..211 25/87 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 234..258 5/26 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 272..382 26/95 (27%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q06945 392..400
Blue background indicates that the domain is not in the aligned region.

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