Protein Alignment SoxN and sox-3

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_510439.1
• Gene: sox-3 / 185534
• WormBaseID: WBGene00004950
• Length: 212
• Species: Caenorhabditis elegans
• Alignment Length: 171
• Identity: 90/171 - (52%)
• Similarity: 103/171 - (60%)
• Gaps: 36/171 - (21%)

  Fly   173 QQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRA 237
            |...|.||||||||||||||||||||.||||||||||||||||:||.|||.||||||||||||||
 Worm    42 QNSLDHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRA 106

  Fly   238 VHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTP---------------- 286
            :|||||||||||||||.|: :..|::..:...||           .:.|
 Worm   107 LHMKEHPDYKYRPRRKPKS-SNLKQQPRLNIAMP-----------TIPPQSLFNYSTAFDSLKTH 159

  Fly   287 --TRVQGQPGQNQSLNGSG------GSAAAAAAAAAAAAQQ 319
              ::......|:..|:||.      .:|.|..|||.|||.|
 Worm   160 DLSQYYSSFFQSPVLSGSTYAPYNMMAAYARQAAAVAAASQ 200

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	68/74 (92%)
sox-3	NP_510439.1	HMG-box_SoxB	46..125	CDD:438790	71/78 (91%)