DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SoxN and Hmgb3

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_032279.1 Gene:Hmgb3 / 15354 MGIID:1098219 Length:200 Species:Mus musculus


Alignment Length:81 Identity:26/81 - (32%)
Similarity:49/81 - (60%) Gaps:0/81 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 ATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 231
            |...|.::..:..|||.:.|.::....|.|:.|.||.:...:::|:||..|.:||::||:|::.:
Mouse    81 AKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTK 145

  Fly   232 AKRLRAVHMKEHPDYK 247
            |.:|:..:.|:..|||
Mouse   146 AAKLKEKYEKDVADYK 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 24/71 (34%)
Hmgb3NP_032279.1 HMG-box_HMGB_rpt1 13..76 CDD:438794
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..97 4/15 (27%)
HMG-box_HMGB_rpt2 91..161 CDD:438795 22/69 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..200 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.