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Protein Alignment SoxN and Hmgb1

DIOPT Version :10

Sequence 1:	NP_001260269.1	Gene:	SoxN / 44275	FlyBaseID:	FBgn0029123	Length:	761	Species:	Drosophila melanogaster
Sequence 2:	NP_034569.1	Gene:	Hmgb1 / 15289	MGIID:	96113	Length:	215	Species:	Mus musculus

Alignment Length:	85	Identity:	22/85 - (25%)
Similarity:	47/85 - (55%)	Gaps:	2/85 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly   180 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHP 244
            |||.:||.::....|.|:..::|.:...:::|:||..|.:.:..:|:|:..:|.:|:..:.|:..
Mouse    96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA 160

  Fly   245 DY--KYRPRRKTKTLTKTKE 262
            .|  |.:|....|.:.|.::
Mouse   161 AYRAKGKPDAAKKGVVKAEK 180

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.