DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Dsp1

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001138203.1 Gene:Dsp1 / 117294 FlyBaseID:FBgn0278608 Length:397 Species:Drosophila melanogaster


Alignment Length:248 Identity:70/248 - (28%)
Similarity:89/248 - (35%) Gaps:87/248 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   492 LMNMYHLPDEQRHLLHYQTDSPDLQQQHQSMQQQQQHLPQQHLSQQHQQIPQQHHTMQQQQQQHH 556
            |||::....:|:.:.||         |.|...||||.:.||.| ||||.:      :||.|||  
  Fly     2 LMNIHQPTIDQQTIQHY---------QQQLAAQQQQQVQQQQL-QQHQVV------VQQNQQQ-- 48

  Fly   557 LQHQQSLRAMAPLAHMXEMASAYGAAGSSVSVSPPLPPYMPTAPQQQQQQQQQQQQLLNGRPSPT 621
             .||.|....|.:.                                  .||....::.:..|:| 
  Fly    49 -AHQNSSNTTAGVG----------------------------------TQQLFTYKMASSFPNP- 77

  Fly   622 ASGSSGGRSSAHSSGHTAAHSPALAAAYQLTPSAATSSATSAAA---AAATAAAVAAAAAAGSSF 683
                                      |..:....|||:|.....   ....|.|.||||..||.:
  Fly    78 --------------------------ATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVPGSQW 116

  Fly   684 AASASMLDMQQQHLEEQQQHHHLHYQQQQQQHYQQQQQQQQQLQHLPQQQQHQ 736
            ..||:.......:...|.||.    ||||||..||||||.||.|.:.||||.|
  Fly   117 WYSAANQGQVDANTAAQLQHQ----QQQQQQQQQQQQQQHQQQQQMQQQQQQQ 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790
Dsp1NP_001138203.1 HMG-box_HMGB_rpt1 182..250 CDD:438794
HMG-box_NHP6-like 262..342 CDD:438792
Blue background indicates that the domain is not in the aligned region.

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